RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 NUF2Q9BZD4 464 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 SAYSD1Q9NPB0 183 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 MKS1Q9NXB0 559 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 SLC17A7Q9P2U7 560 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 PACSIN3Q9UKS6 424 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 HDAC9Q9UKV0 1011 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 CHRNB1P11230 501 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 STAT1P42224 750 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 MAGEA4P43358 317 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 CASP7P55210 303 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 ZNF829Q3KNS6 432 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 PLEKHA7Q6IQ23 1121 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 AHI1Q8N157 1196 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 BIRC8Q96P09 236 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 DNAJC18Q9H819 358 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 MAGEF1Q9HAY2 307 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 TAGLN3Q9UI15 199 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 MYH11P35749 1972 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 A0A088AWK7 358 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 TMEM114B3SHH9 223 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 SIN3BO75182 1162 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 COMTP21964 271 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 IRX4P78413 519 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 CCNIQ14094 377 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 RGS21Q2M5E4 152 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 EDRF1Q3B7T1 1238 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 BORAQ6PGQ7 559 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 TAMM41Q96BW9 452 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 FGFBP2Q9BYJ0 223 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 SEL1LQ9UBV2 794 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 GNEQ9Y223 722 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 TLL2Q9Y6L7 1015 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 C3P01024 1663 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 USP6P35125 1406 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 PRR5-ARHGAP8B1AHC4 643 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 KLHL41O60662 606 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 CD48P09326 243 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 BGNP21810 368 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 RFC1P35251 1148 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 ARHGAP8P85298 464 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 METTL24Q5JXM2 366 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 FAM182AQ5T1J6 154 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 RHBDF2Q6PJF5 856 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 CHST7Q9NS84 486 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 TYW1Q9NV66 732 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 KRBA1A5PL33 1030 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 PSMD11O00231 422 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 PSMD12O00232 456 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 DENRO43583 198 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 DLDP09622 509 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 TMEM253P0C7T8 217 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 CCDC130P13994 396 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 TNFAIP3P21580 790 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 BTDP43251 543 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 RAB15P59190 212 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 PRKG1Q13976 671 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 SEC23AQ15436 765 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 USP43Q70EL4 1123 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 FAM20CQ8IXL6 584 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 SUN5Q8TC36 379 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 LARP4BQ92615 738 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 BTBD6Q96KE9 485 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 ZSCAN10Q96SZ4 725 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 NUDT12Q9BQG2 462 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 ZSWIM1Q9BR11 485 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 RNF41Q9H4P4 317 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 ZNF696Q9H7X3 374 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 PLK2Q9NYY3 685 aa12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 HERC5Q9UII4 1024 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-213ENST00000511496 PRKACBP22694 351 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 RRM1P23921 792 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 ARL1P40616 181 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 PEX3P56589 373 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 UBAP2LQ14157 1087 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CHRNA2Q15822 529 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 MCF2L2Q86YR7 1114 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 ZFPM1Q8IX07 1006 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CALML6Q8TD86 181 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 HSPH1Q92598 858 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 FERMT1Q9BQL6 677 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 HAUS8Q9BT25 410 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 RNF38Q9H0F5 515 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 RETREG1Q9H6L5 497 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 NCKIPSDQ9NZQ3 722 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 HACD3Q9P035 362 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 NR2E3Q9Y5X4 410 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 SLIT1O75093 1534 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TYROBPO43914 113 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 GMNNO75496 209 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 BAIAP3O94812 1187 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 OR52Z1P0C646 297 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 DDX5P17844 614 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CALML3P27482 149 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CDH15P55291 814 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 RALGDSQ12967 914 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 ALX1Q15699 326 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TMTC4Q5T4D3 741 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 PROM2Q8N271 834 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 LCORLQ8N3X6 602 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TTC39CQ8N584 583 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms