RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 NKD2Q969F2 451 aaPredicted RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 RABEP2Q9H5N1 569 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 AAASQ9NRG9 546 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 INTS9Q9NV88 658 aaKnown RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 KIAA1257Q9ULG3 409 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 R3HDM2Q9Y2K5 976 aaKnown RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 RBM47A0AV96 593 aaKnown RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 DCDC2CA8MYV0 355 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 SMAPO00193 183 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 LGALS2P05162 132 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 ITGAVP06756 1048 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 CXCL8P10145 99 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 KRT3P12035 628 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 CHN1P15882 459 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 ATF7P17544 494 aaPredicted RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 PSMA2P25787 234 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 KLRC2P26717 231 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 AUHQ13825 339 aaKnown RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 ZNF268Q14587 947 aaPredicted RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 MORF4L2Q15014 288 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 STILQ15468 1287 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 Q3C1V9 767 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 LDLRAD1Q5T700 205 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 HIBCHQ6NVY1 386 aaPredicted RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 ANKS4BQ8N8V4 417 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 EPS8L3Q8TE67 593 aaKnown RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 CFAP57Q96MR6 1250 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 ADPGKQ9BRR6 497 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 HERPUD2Q9BSE4 406 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 SYNCQ9H7C4 482 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 ACTR5Q9H9F9 607 aaPredicted RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 PCDH9Q9HC56 1237 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 NXF1Q9UBU9 619 aaKnown RBP12.63□□□□□ -0.39
NUP54-202ENST00000502850 ITGA11Q9UKX5 1188 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 ZNF148Q9UQR1 794 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 C2CD2Q9Y426 696 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 ACTL7BQ9Y614 415 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 MGAMO43451 1857 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 EVPLQ92817 2033 aa12.63□□□□□ -0.39
NUP54-202ENST00000502850 hCG_1818297A0A087WSY0 165 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 SMIM23A6NLE4 172 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 DNALI1O14645 258 aaPredicted RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 TP73O15350 636 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 STRNO43815 780 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 CDH16O75309 829 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 ACSL3O95573 720 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 HMGCRP04035 888 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 STAG3L1P0CL83 205 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 VDRP11473 427 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 DESP17661 470 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 VCPP55072 806 aaKnown RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 PTPN11Q06124 597 aaPredicted RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 ZNF394Q53GI3 561 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 EEF1DP3Q658K8 133 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 MFSD7Q6UXD7 560 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 TAX1BP1Q86VP1 789 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 ALLCQ8N6M5 410 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 LINC01465Q8N7H1 131 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 LGALS13Q9UHV8 139 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 SHOC2Q9UQ13 582 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 AKT3Q9Y243 479 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 LRRD1A4D1F6 860 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 TRIM66O15016 1216 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 B4GALT5O43286 388 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 CILPO75339 1184 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 INSRRP14616 1297 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 SSTR3P32745 418 aaPredicted RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 CHKAP35790 457 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 CDKN2BP42772 138 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 GCLCP48506 637 aaPredicted RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 RAD23BP54727 409 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 SNX16P57768 344 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 PSMC1P62191 440 aaKnown RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 CDC42EP1Q00587 391 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 ZNF252P-AS1Q0IIN9 211 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 TMEM132DQ14C87 1099 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 LLGL1Q15334 1064 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 P3H1Q32P28 736 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 ZNF792Q3KQV3 632 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 WDR72Q3MJ13 1102 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 DCAF4L1Q3SXM0 396 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 TTC31Q49AM3 519 aaPredicted RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 DENND1BQ6P3S1 775 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 CCDC121Q6ZUS5 278 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 ZNF410Q86VK4 478 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 C1orf127Q8N9H9 656 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 TRAPPC12Q8WVT3 735 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 ATXN2LQ8WWM7 1075 aaKnown RBP12.62□□□□□ -0.39
NUP54-202ENST00000502850 TFAP2BQ92481 460 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 TMEM176AQ96HP8 235 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 CABS1Q96KC9 395 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 NCAPGQ9BPX3 1015 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 DNAI2Q9GZS0 605 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 PDZD7Q9H5P4 517 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 IFT122Q9HBG6 1241 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 NINJ2Q9NZG7 142 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 IVNS1ABPQ9Y6Y0 642 aa12.62□□□□□ -0.39
NUP54-202ENST00000502850 CITO14578 2027 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 GOLGA6L7A0A1B0GV03 622 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 LACTBL1A8MY62 500 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms