RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 LONP2Q86WA8 852 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 FUBP3Q96I24 572 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP54-216ENST00000498143 ZSCAN31Q96LW9 406 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 FKBP14Q9NWM8 211 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 PCNX1Q96RV3 2341 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CCDC168Q8NDH2 2452 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 GOLGA8RI6L899 631 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 AP3D1O14617 1153 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 PSMA7O14818 248 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 ANGPT2O15123 496 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 KLK10O43240 276 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 RASA4O43374 803 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 PYGMP11217 842 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 AVPR1AP37288 418 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CLK1P49759 484 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 ZNF75DP51815 510 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 SMTNP53814 917 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 SLC7A5Q01650 507 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 TBL3Q12788 808 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 C21orf62-AS1Q17RA5 79 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 RBM20Q5T481 1227 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 ZNF618Q5T7W0 954 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 IRAK1BP1Q5VVH5 260 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 STXBP4Q6ZWJ1 553 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 DEPDC4Q8N2C3 294 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 PPM1NQ8N819 430 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 GIMAP8Q8ND71 665 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 CDC6Q99741 560 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 SLC7A5P2Q9GIP4 190 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 BZW2Q9Y6E2 419 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 XPOTO43592 962 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 SGTAO43765 313 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 HLA-EP13747 358 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CORO7P57737 925 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 AP1B1Q10567 949 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 STIM1Q13586 685 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 MOGSQ13724 837 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 MAPRE1Q15691 268 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 ANO7Q6IWH7 933 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 JAZF1Q86VZ6 243 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 SH3RF3Q8TEJ3 882 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 MRPS27Q92552 414 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 P3H4Q92791 437 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 OLFM3Q96PB7 478 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 SEC62Q99442 399 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 IDI2Q9BXS1 227 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 FBXO28Q9NVF7 368 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 PSD3Q9NYI0 1048 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 BTBD7Q9P203 1132 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 ORC3Q9UBD5 711 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 F5P12259 2224 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SYNJ2BP-COX16A0A087WUM0 186 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TTLL8A6PVC2 850 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 PYCARD-AS1I3L0S3 204 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 GNB5O14775 395 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 AKR1B10O60218 316 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CEACAM1P13688 526 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TRIM23P36406 574 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CENPAP49450 140 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TIMM10P62072 90 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 FSCBQ5H9T9 825 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 EGFLAMQ63HQ2 1017 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.38□□□□□ -1.55
USP54-216ENST00000498143 NYAP1Q6ZVC0 841 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TRMT10CQ7L0Y3 403 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 ALKBH8Q96BT7 664 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 B3GALT6Q96L58 329 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ADPGKQ9BRR6 497 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 PARVGQ9HBI0 331 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 PDE11AQ9HCR9 933 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 NRBP2Q9NSY0 501 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 NDE1Q9NXR1 346 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TUBE1Q9UJT0 475 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SNX6Q9UNH7 406 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ANKRD65E5RJM6 399 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 LINC01565O15544 149 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 STX6O43752 255 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TSPAN1O60635 241 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SUPT3HO75486 399 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 EPN2O95208 641 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 BPNT1O95861 308 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 KRT8P05787 483 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 RNASE9P60153 205 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 AACSQ86V21 672 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 HEATR4Q86WZ0 1026 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SLC43A3Q8NBI5 491 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ATP8B4Q8TF62 1192 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 HDAC7Q8WUI4 952 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 P2RX5Q93086 422 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 HIC2Q96JB3 615 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ADNPQ9H2P0 1102 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 RAD21L1Q9H4I0 556 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 RPF1Q9H9Y2 349 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 TUFT1Q9NNX1 390 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SETD4Q9NVD3 440 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 XPO7Q9UIA9 1087 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 PIAS3Q9Y6X2 628 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 A1L4Q6 167 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TBC1D3BA6NDS4 549 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 LRRIQ4A6NIV6 560 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms