RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SPACA9Q96E40 222 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SGF29Q96ES7 293 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SCLYQ96I15 445 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TEKT5Q96M29 485 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SMC6Q96SB8 1091 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CITED2Q99967 270 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CDK19Q9BWU1 502 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 LRRC3Q9BY71 257 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 UPF3BQ9BZI7 483 aaKnown RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 NUP62CLQ9H1M0 184 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 EHD4Q9H223 541 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CARD9Q9H257 536 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 VPS16Q9H269 839 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 HSD3B7Q9H2F3 369 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 NDST4Q9H3R1 872 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ERVMER34-1Q9H9K5 563 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SLC52A2Q9HAB3 445 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SCPEP1Q9HB40 452 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SARS2Q9NP81 518 aaKnown RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 NPHS2Q9NP85 383 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ATP13A2Q9NQ11 1180 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 NRIP3Q9NQ35 241 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SLC35D1Q9NTN3 355 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 C14orf119Q9NWQ9 140 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 UCKL1Q9NWZ5 548 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 USP36Q9P275 1121 aaKnown RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 KLHL9Q9P2J3 617 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 MBD2Q9UBB5 411 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 MBD1Q9UIS9 605 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 FOXD3Q9UJU5 478 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ANGPTL2Q9UKU9 493 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 STK38LQ9Y2H1 464 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ZNF510Q9Y2H8 683 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 NAALAD2Q9Y3Q0 740 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CLDN16Q9Y5I7 305 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ZNF536O15090 1300 aa4.46□□□□□ -1.69
BRCA1-220ENST00000492859 NCOA3Q9Y6Q9 1424 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CYP3A7-CYP3A51PA0A087WV96 503 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HEATR9A2RTY3 570 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 XKRY2A2RUG3 117 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 E7EVH7 732 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 H0YCG3 227 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 GOLGA8MH3BSY2 632 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SH2B2O14492 632 aaPredicted RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PRODHO43272 600 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 BUB1O43683 1085 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PHF2O75151 1096 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 FBXO24O75426 580 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SEC24DO94855 1032 aaPredicted RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 GCNT3O95395 438 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 DLGAP3O95886 979 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 EGFRP00533 1210 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CFBP00751 764 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SOD2P04179 222 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ASLP04424 464 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 URODP06132 367 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 FGF4P08620 206 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CSH1P0DML2 217 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CSH2P0DML3 217 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TXNP10599 105 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PRKAR1AP10644 381 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PRG2P13727 222 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CYP3A7P24462 503 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 MSNP26038 577 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PTBP1P26599 531 aaKnown RBP eCLIP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 EEF1DP29692 281 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 AKT1P31749 480 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TRIM23P36406 574 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 NNMTP40261 264 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HTR2BP41595 481 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 GCLCP48506 637 aaPredicted RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 LIG3P49916 1009 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 DNM2P50570 870 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CCR3P51677 355 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ARSDP51689 593 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HUNKP57058 714 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 YWHAZP63104 245 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ABATP80404 500 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 YWHAHQ04917 246 aaPredicted RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 MAP3K12Q12852 859 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 RPA4Q13156 261 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ITGA7Q13683 1181 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 GIT2Q14161 759 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PTK2BQ14289 1009 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 RFTN1Q14699 578 aaPredicted RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ARID5BQ14865 1188 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 NCF4Q15080 339 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 UBE3CQ15386 1083 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 GRIK5Q16478 980 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 AANATQ16613 207 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ZACNQ401N2 412 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HSP90AA5PQ58FG0 334 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HSP90AA4PQ58FG1 418 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HABP4Q5JVS0 413 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 LCE2CQ5TA81 110 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ATL3Q6DD88 541 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 DENND5AQ6IQ26 1287 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ACAD10Q6JQN1 1059 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 RANBP10Q6VN20 620 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 GK5Q6ZS86 529 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms