RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 SDHAF4Q5VUM1 108 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 TMEM150AQ86TG1 271 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 OSTM1Q86WC4 334 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 GPD1LQ8N335 351 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 CSGALNACT2Q8N6G5 542 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 LRRC52Q8N7C0 313 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 BPIFB1Q8TDL5 484 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 CACTINQ8WUQ7 758 aaKnown RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 SLC46A2Q9BY10 475 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 EPC1Q9H2F5 836 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 TNMDQ9H2S6 317 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 C8orf33Q9H7E9 229 aaPredicted RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 TMEM206Q9H813 350 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 RBM12Q9NTZ6 932 aaKnown RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 DDX43Q9NXZ2 648 aaKnown RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 NCDNQ9UBB6 729 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 TFIP11Q9UBB9 837 aaKnown RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 PTPRJQ12913 1337 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 MYBPHLA2RUH7 354 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 HUS1O60921 280 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 PRPF40AO75400 957 aaKnown RBP16.89■□□□□ 0.29
SMPD4-220ENST00000491319 TMEM191BP0C7N4 346 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 WEE1P30291 646 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 CCR3P51677 355 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 NLRP12P59046 1061 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 SATB1Q01826 763 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 NFE2Q16621 373 aaPredicted RBP16.89■□□□□ 0.29
SMPD4-220ENST00000491319 INTS6LQ5JSJ4 861 aaKnown RBP16.89■□□□□ 0.29
SMPD4-220ENST00000491319 Q6ZS52 159 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 CMTM8Q8IZV2 173 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 LEO1Q8WVC0 666 aaPredicted RBP16.89■□□□□ 0.29
SMPD4-220ENST00000491319 DHX58Q96C10 678 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 PKMYT1Q99640 499 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 FAM126AQ9BYI3 521 aaPredicted RBP16.89■□□□□ 0.29
SMPD4-220ENST00000491319 TRIM9Q9C026 710 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 KBTBD4Q9NVX7 518 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 MAGED2Q9UNF1 606 aaPredicted RBP16.89■□□□□ 0.29
SMPD4-220ENST00000491319 SNX9Q9Y5X1 595 aa16.89■□□□□ 0.29
SMPD4-220ENST00000491319 PPP6R2O75170 966 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 F11P03951 625 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 CYP2F1P24903 491 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 HOXD13P35453 343 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 MYL7Q01449 175 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 LRRC32Q14392 662 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 PON2Q15165 354 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 FOXD4L5Q5VV16 416 aaPredicted RBP16.88■□□□□ 0.29
SMPD4-220ENST00000491319 C1orf228Q6PIY5 440 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 MAMSTRQ6ZN01 415 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 ERMP1Q7Z2K6 904 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 RALGPS2Q86X27 583 aaPredicted RBP16.88■□□□□ 0.29
SMPD4-220ENST00000491319 CBWD2Q8IUF1 395 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 ADGRF2Q8IZF7 708 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 TMEM86AQ8N2M4 240 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 MAB21L3Q8N8X9 362 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 OR5B17Q8NGF7 314 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 FOXD4L4Q8WXT5 416 aaPredicted RBP16.88■□□□□ 0.29
SMPD4-220ENST00000491319 ACBD6Q9BR61 282 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 INTS13Q9NVM9 706 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 GDAP2Q9NXN4 497 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 CCL26Q9Y258 94 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 DNAH14Q0VDD8 3507 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 MYH10P35580 1976 aa16.88■□□□□ 0.29
SMPD4-220ENST00000491319 KIAA0391O15091 583 aaKnown RBP16.87■□□□□ 0.29
SMPD4-220ENST00000491319 TADA3O75528 432 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 CSH1P0DML2 217 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 CSH2P0DML3 217 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 ASIC1P78348 528 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 RBP5P82980 135 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 PLCB2Q00722 1185 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 FOXK2Q01167 660 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 PPP2R5DQ14738 602 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 DDR2Q16832 855 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 TXNDC8Q6A555 127 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 SHC4Q6S5L8 630 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 STXBP4Q6ZWJ1 553 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 TOP6BLQ8N6T0 577 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 CELF5Q8N6W0 485 aaKnown RBP16.87■□□□□ 0.29
SMPD4-220ENST00000491319 ANKRD36BP1Q96IX9 119 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 ZNF396Q96N95 335 aaPredicted RBP16.87■□□□□ 0.29
SMPD4-220ENST00000491319 CUEDC2Q9H467 287 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 ABCB6Q9NP58 842 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 HSPBP1Q9NZL4 362 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 GTF3C4Q9UKN8 822 aa16.87■□□□□ 0.29
SMPD4-220ENST00000491319 GABRDO14764 452 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 YEATS4O95619 227 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 AVPR1AP37288 418 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 CXCL12P48061 93 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 SOWAHAQ2M3V2 549 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 FOXD4L6Q3SYB3 417 aaPredicted RBP16.86■□□□□ 0.29
SMPD4-220ENST00000491319 FOXD4L3Q6VB84 417 aaPredicted RBP16.86■□□□□ 0.29
SMPD4-220ENST00000491319 SPEM1Q8N4L4 309 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 RIN3Q8TB24 985 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 SPATA18Q8TC71 538 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 USP13Q92995 863 aaPredicted RBP16.86■□□□□ 0.29
SMPD4-220ENST00000491319 LRRC27Q9C0I9 530 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 C2orf42Q9NWW7 574 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 ZMYM5Q9UJ78 669 aa16.86■□□□□ 0.29
SMPD4-220ENST00000491319 ZNF233A6NK53 670 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 EIF3DO15371 548 aaKnown RBP eCLIP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 CUTAO60888 179 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms