RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GRID2IPA4D2P6 1211 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 TBKBP1A7MCY6 615 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 MMP8P22894 467 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 HADHBP55084 474 aaKnown RBP22.96■■□□□ 1.27
SMC4-221ENST00000489573 GOLGA7BQ2TAP0 167 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 LIN9Q5TKA1 542 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 METTL23Q86XA0 190 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 WDTC1Q8N5D0 677 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 SUSD3Q96L08 255 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 NRDE2Q9H7Z3 1164 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 FAM49BQ9NUQ9 324 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 DDX43Q9NXZ2 648 aaKnown RBP22.96■■□□□ 1.27
SMC4-221ENST00000489573 DNAJB4Q9UDY4 337 aa22.96■■□□□ 1.27
SMC4-221ENST00000489573 TNRC18O15417 2968 aaPredicted RBP22.96■■□□□ 1.27
SMC4-221ENST00000489573 LTBP2Q14767 1821 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 I3L4J1 428 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 EFCAB14O75071 495 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 CYP11A1P05108 521 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 ITGB1P05556 798 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 CALB1P05937 261 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 PTP4A2Q12974 167 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 PPP1R26Q5T8A7 1209 aaPredicted RBP22.95■■□□□ 1.26
SMC4-221ENST00000489573 LRRC43Q8N309 656 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 UVRAGQ9P2Y5 699 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 COG5Q9UP83 839 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 JRKLQ9Y4A0 524 aa22.95■■□□□ 1.26
SMC4-221ENST00000489573 TIMM13Q9Y5L4 95 aaPredicted RBP22.95■■□□□ 1.26
SMC4-221ENST00000489573 F8W810 466 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 MTA2O94776 668 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 RRM1P23921 792 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 ERICH1Q86X53 443 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 B3GALNT2Q8NCR0 500 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 NUP85Q9BW27 656 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 HESX1Q9UBX0 185 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 PCDHB8Q9UN66 801 aa22.94■■□□□ 1.26
SMC4-221ENST00000489573 PRG3Q9Y2Y8 225 aaPredicted RBP22.94■■□□□ 1.26
SMC4-221ENST00000489573 URI1O94763 535 aaPredicted RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 UPP2O95045 317 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 AMHP03971 560 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 ACAT1P24752 427 aaKnown RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 PSMC1P62191 440 aaKnown RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 SYCE1Q8N0S2 351 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 LRRC57Q8N9N7 239 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 MSANTD4Q8NCY6 345 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 ZNF564Q8TBZ8 553 aaPredicted RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 SYT15Q9BQS2 421 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 TMEM175Q9BSA9 504 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 PRKAG2Q9UGJ0 569 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 CYTH4Q9UIA0 394 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 TSC2P49815 1807 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 ENC1O14682 589 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 ATP1A1P05023 1023 aaKnown RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 PTPN1P18031 435 aaKnown RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 TYMPP19971 482 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 GPD2P43304 727 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 MLLT1Q03111 559 aaPredicted RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 C2CD6Q53TS8 623 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 UBA3Q8TBC4 463 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 LPIN3Q9BQK8 851 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 IL23AQ9NPF7 189 aa22.93■■□□□ 1.26
SMC4-221ENST00000489573 CHORDC1Q9UHD1 332 aaPredicted RBP22.93■■□□□ 1.26
SMC4-221ENST00000489573 NRP1O14786 923 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 BUB1BO60566 1050 aaPredicted RBP22.92■■□□□ 1.26
SMC4-221ENST00000489573 DGKIO75912 1065 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 SETSIPP0DME0 302 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 ACRP10323 421 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 CCDC130P13994 396 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 PCSK1P29120 753 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 PTPN20Q4JDL3 420 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 PKDCCQ504Y2 493 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 COLEC11Q9BWP8 271 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 CDH9Q9ULB4 789 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 STRIP2Q9ULQ0 834 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 SCINQ9Y6U3 715 aa22.92■■□□□ 1.26
SMC4-221ENST00000489573 TRAPPC3O43617 180 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 TADA2AO75478 443 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 BAIAP3O94812 1187 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 FTCDO95954 541 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 SLC11A1P49279 550 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 WDR5P61964 334 aaKnown RBP22.91■■□□□ 1.26
SMC4-221ENST00000489573 PDCLQ13371 301 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 PLEKHA7Q6IQ23 1121 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 SLFN11Q7Z7L1 901 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 TTC30AQ86WT1 665 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 TOP1MTQ969P6 601 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 MRPL47Q9HD33 250 aaKnown RBP22.91■■□□□ 1.26
SMC4-221ENST00000489573 HCSTQ9UBK5 93 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 FAN1Q9Y2M0 1017 aa22.91■■□□□ 1.26
SMC4-221ENST00000489573 ATP2C2O75185 946 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 ALDH2P05091 517 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 ADORA2BP29275 332 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 BCAT1P54687 386 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 PPIGQ13427 754 aaKnown RBP eCLIP22.9■■□□□ 1.262e-27■■■■■ 81.9
SMC4-221ENST00000489573 KIAA0319Q5VV43 1072 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 PAPD7Q5XG87 772 aaKnown RBP22.9■■□□□ 1.26
SMC4-221ENST00000489573 OVOS1Q6IE37 1185 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 C11orf63Q6NUN7 778 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 LLGL2Q6P1M3 1020 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 PHLDB2Q86SQ0 1253 aa22.9■■□□□ 1.26
SMC4-221ENST00000489573 DAAM2Q86T65 1068 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms