RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 STKLD1Q8NE28 680 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 CCDC47Q96A33 483 aaKnown RBP26.78■■□□□ 1.88
HMGN1-217ENST00000489072 RSPRY1Q96DX4 576 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 PHOX2BQ99453 314 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 GPR88Q9GZN0 384 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 ATXN3LQ9H3M9 355 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 OBSL1O75147 1896 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 PTPRDP23468 1912 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 F5P12259 2224 aa26.78■■□□□ 1.88
HMGN1-217ENST00000489072 MIA3Q5JRA6 1907 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 COL4A2P08572 1712 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 RFX1P22670 979 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 WARSP23381 471 aaKnown RBP26.77■■□□□ 1.88
HMGN1-217ENST00000489072 CYP2F1P24903 491 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 HOXD11P31277 338 aaPredicted RBP26.77■■□□□ 1.88
HMGN1-217ENST00000489072 MYL6P60660 151 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 CLDN10P78369 228 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 PFKPQ01813 784 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 KCNB1Q14721 858 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 MLF2Q15773 248 aaPredicted RBP26.77■■□□□ 1.88
HMGN1-217ENST00000489072 SDHAF4Q5VUM1 108 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 TDRD10Q5VZ19 366 aaKnown RBP26.77■■□□□ 1.88
HMGN1-217ENST00000489072 CCDC105Q8IYK2 499 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 MMS19Q96T76 1030 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 SYT15Q9BQS2 421 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 MRPL45Q9BRJ2 306 aaKnown RBP26.77■■□□□ 1.88
HMGN1-217ENST00000489072 FOXQ1Q9C009 403 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 XYLT2Q9H1B5 865 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 ABCB6Q9NP58 842 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 MAPK8IP1Q9UQF2 711 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 TRAF3IP3Q9Y228 551 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 NME7Q9Y5B8 376 aa26.77■■□□□ 1.88
HMGN1-217ENST00000489072 H0Y858 1186 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 FGF19O95750 216 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 HMGA1P17096 107 aaKnown RBP26.76■■□□□ 1.87
HMGN1-217ENST00000489072 PSMC1P62191 440 aaKnown RBP26.76■■□□□ 1.87
HMGN1-217ENST00000489072 DLG4P78352 724 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 CYP4F8P98187 520 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 FAM171BQ6P995 826 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 GPIHBP1Q8IV16 184 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 DDX23Q9BUQ8 820 aaKnown RBP26.76■■□□□ 1.87
HMGN1-217ENST00000489072 CRTAC1Q9NQ79 661 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 TICRRQ7Z2Z1 1910 aa26.76■■□□□ 1.87
HMGN1-217ENST00000489072 STAU1O95793 577 aaKnown RBP26.75■■□□□ 1.87
HMGN1-217ENST00000489072 PDGFRBP09619 1106 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 TRPC3Q13507 836 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 DDR2Q16832 855 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 WDR72Q3MJ13 1102 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 GPR158Q5T848 1215 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 TMEM150AQ86TG1 271 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 ENGASEQ8NFI3 743 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 SHDQ96IW2 340 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 TRMT61BQ9BVS5 477 aaKnown RBP26.75■■□□□ 1.87
HMGN1-217ENST00000489072 FAM86C1Q9NVL1 165 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 CDH9Q9ULB4 789 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 GREB1Q4ZG55 1949 aa26.75■■□□□ 1.87
HMGN1-217ENST00000489072 HEPACAM2A8MVW5 462 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 CALUO43852 315 aaPredicted RBP26.74■■□□□ 1.87
HMGN1-217ENST00000489072 PHACTR2O75167 634 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 KIF20AO95235 890 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 C4BPAP04003 597 aaKnown RBP26.74■■□□□ 1.87
HMGN1-217ENST00000489072 PSMC3P17980 439 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 PRKCQQ04759 706 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 BIRC3Q13489 604 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 PNOCQ13519 176 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 TAF12Q16514 161 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 CFAP221Q4G0U5 840 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 SPATA2LQ8IUW3 424 aaPredicted RBP26.74■■□□□ 1.87
HMGN1-217ENST00000489072 ARID3BQ8IVW6 561 aaPredicted RBP26.74■■□□□ 1.87
HMGN1-217ENST00000489072 GUF1Q8N442 669 aaKnown RBP26.74■■□□□ 1.87
HMGN1-217ENST00000489072 DTWD2Q8NBA8 298 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 PJA1Q8NG27 643 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 BRD9Q9H8M2 597 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 HEBP1Q9NRV9 189 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 DLGAP2Q9P1A6 1054 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 SIT1Q9Y3P8 196 aa26.74■■□□□ 1.87
HMGN1-217ENST00000489072 LRRN2O75325 713 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 TACC1O75410 805 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 VNN1O95497 513 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 DCNP07585 359 aaKnown RBP26.73■■□□□ 1.87
HMGN1-217ENST00000489072 CDC25CP30307 473 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 ATICP31939 592 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 AP3M2P53677 418 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 TNNC1P63316 161 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 ARHGAP15Q53QZ3 475 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 C1orf220Q5T0J3 134 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 CEP135Q66GS9 1140 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 MFSD6LQ8IWD5 586 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 DEPDC1BQ8WUY9 529 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 DNASE1L2Q92874 299 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 MYLPFQ96A32 169 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 ELMO3Q96BJ8 720 aa26.73■■□□□ 1.87
HMGN1-217ENST00000489072 FUBP3Q96I24 572 aaKnown RBP eCLIP26.73■■□□□ 1.87
HMGN1-217ENST00000489072 ZNF638Q14966 1978 aaKnown RBP26.73■■□□□ 1.87
HMGN1-217ENST00000489072 VPS13AQ96RL7 3174 aa26.72■■□□□ 1.87
HMGN1-217ENST00000489072 CACNA1IQ9P0X4 2223 aa26.72■■□□□ 1.87
HMGN1-217ENST00000489072 KANSL1LA0AUZ9 987 aa26.72■■□□□ 1.87
HMGN1-217ENST00000489072 GOLGA6L4A6NEF3 574 aa26.72■■□□□ 1.87
HMGN1-217ENST00000489072 SHISA7A6NL88 538 aa26.72■■□□□ 1.87
HMGN1-217ENST00000489072 F11P03951 625 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms