RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GPD1P21695 349 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 IBSPP21815 317 aaPredicted RBP4.17□□□□□ -1.74
VPS50-216ENST00000484954 DRD4P21917 467 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 RAB27AP51159 221 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 FOXF2Q12947 444 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 IFIT1BQ5T764 474 aaKnown RBP4.17□□□□□ -1.74
VPS50-216ENST00000484954 LCE1AQ5T7P2 110 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 FAM160B1Q5W0V3 765 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 MAVSQ7Z434 540 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 TPH2Q8IWU9 490 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 RAVER1Q8IY67 606 aaKnown RBP4.17□□□□□ -1.74
VPS50-216ENST00000484954 PPP1R35Q8TAP8 253 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 DIS3LQ8TF46 1054 aaKnown RBP4.17□□□□□ -1.74
VPS50-216ENST00000484954 DDB2Q92466 427 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 LRGUKQ96M69 825 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 NT5C1BQ96P26 610 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 MAP3K14Q99558 947 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 NUP88Q99567 741 aaPredicted RBP4.17□□□□□ -1.74
VPS50-216ENST00000484954 SERGEFQ9UGK8 458 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 CPA4Q9UI42 421 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 SSX2IPQ9Y2D8 614 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 ANKRD6Q9Y2G4 727 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 AOX1Q06278 1338 aa4.17□□□□□ -1.74
VPS50-216ENST00000484954 hCG_2014768A0A024R1R8 64 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 ZFXP17010 805 aaPredicted RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 LIPAP38571 399 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 CLCN2P51788 898 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 LILRA4P59901 499 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 KRTAP10-6P60371 365 aaPredicted RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 PIN1Q13526 163 aaPredicted RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 KHDC1LQ5JSQ8 128 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 EMC10Q5UCC4 262 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 SRRM1Q8IYB3 904 aaKnown RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 BRIX1Q8TDN6 353 aaKnown RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 JPH3Q8WXH2 748 aaPredicted RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 CDK5RAP3Q96JB5 506 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 FAM167AQ96KS9 214 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 MRGPRX1Q96LB2 322 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 P2RX7Q99572 595 aaKnown RBP4.16□□□□□ -1.74
VPS50-216ENST00000484954 ANLNQ9NQW6 1124 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 EHD3Q9NZN3 535 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 RNF7Q9UBF6 113 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 SERTAD3Q9UJW9 196 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 STXBP5LQ9Y2K9 1186 aa4.16□□□□□ -1.74
VPS50-216ENST00000484954 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.16□□□□□ -1.74
VPS50-216ENST00000484954 SETD1BQ9UPS6 1966 aaKnown RBP4.15□□□□□ -1.74
VPS50-216ENST00000484954 ORC4O43929 436 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 OFD1O75665 1012 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 TTLL1O95922 423 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 CCT8P50990 548 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 RAB1AP62820 205 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 TFF2Q03403 129 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 LONRF3Q496Y0 759 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 KRTAP5-4Q6L8H1 288 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 B3GNT9Q6UX72 402 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 C1GALT1C1Q96EU7 318 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 ALG8Q9BVK2 526 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 SIK2Q9H0K1 926 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 SERTAD4Q9NUC0 356 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 TYW1Q9NV66 732 aaKnown RBP4.15□□□□□ -1.75
VPS50-216ENST00000484954 GABBR1Q9UBS5 961 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 ZNF180Q9UJW8 692 aa4.15□□□□□ -1.75
VPS50-216ENST00000484954 THRAP3Q9Y2W1 955 aaKnown RBP4.15□□□□□ -1.75
VPS50-216ENST00000484954 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS50-216ENST00000484954 COL3A1P02461 1466 aaPredicted RBP4.15□□□□□ -1.75
VPS50-216ENST00000484954 FNDC1Q4ZHG4 1894 aaPredicted RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 hCG_1984214I3L0E3 225 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 ZNF213O14771 459 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 SOAT2O75908 522 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 GRPP07492 148 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 HNRNPCP07910 306 aaKnown RBP eCLIP4.14□□□□□ -1.75
VPS50-216ENST00000484954 CT47B1P0C2W7 299 aaPredicted RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 NHLRC4P0CG21 123 aaPredicted RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 NCLP19338 710 aaKnown RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 CTGFP29279 349 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 ANAPC15P60006 121 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 ZIK1Q3SY52 487 aaPredicted RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 TMEM119Q4V9L6 283 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 ARHGAP40Q5TG30 622 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 FCRLBQ6BAA4 426 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 ZNF280BQ86YH2 543 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 DDX17Q92841 729 aaKnown RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 ACO2Q99798 780 aaKnown RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 ARHGEF3Q9NR81 526 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 MRPS17Q9Y2R5 130 aaKnown RBP4.14□□□□□ -1.75
VPS50-216ENST00000484954 WNT6Q9Y6F9 365 aa4.14□□□□□ -1.75
VPS50-216ENST00000484954 PRPF3O43395 683 aaKnown RBP4.13□□□□□ -1.75
VPS50-216ENST00000484954 UBXN7O94888 489 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 IL6RP08887 468 aaPredicted RBP4.13□□□□□ -1.75
VPS50-216ENST00000484954 NPR1P16066 1061 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 HTR1BP28222 390 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 ABCG1P45844 678 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 KCNJ5P48544 419 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 PXNP49023 591 aaPredicted RBP4.13□□□□□ -1.75
VPS50-216ENST00000484954 UCP3P55916 312 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 SRSF4Q08170 494 aaKnown RBP4.13□□□□□ -1.75
VPS50-216ENST00000484954 BMPR2Q13873 1038 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 TREML2Q5T2D2 321 aa4.13□□□□□ -1.75
VPS50-216ENST00000484954 ZNF782Q6ZMW2 699 aaPredicted RBP4.13□□□□□ -1.75
VPS50-216ENST00000484954 EPM2AIP1Q7L775 607 aaPredicted RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms