RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 VRTNQ9H8Y1 702 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 TBC1D17Q9HA65 648 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 IL21Q9HBE4 155 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 GTF3C4Q9UKN8 822 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 MAPK13O15264 365 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 TACC1O75410 805 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 C4BPAP04003 597 aaKnown RBP23.31■■□□□ 1.32
COL9A3-211ENST00000477612 NR3C1P04150 777 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 ACAT1P24752 427 aaKnown RBP23.31■■□□□ 1.32
COL9A3-211ENST00000477612 WEE1P30291 646 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 PRKCQQ04759 706 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 SNW1Q13573 536 aaKnown RBP23.31■■□□□ 1.32
COL9A3-211ENST00000477612 SLC44A4Q53GD3 710 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 ENGASEQ8NFI3 743 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 ZSCAN18Q8TBC5 510 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-211ENST00000477612 XYLT2Q9H1B5 865 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 TRPV5Q9NQA5 729 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 CDH9Q9ULB4 789 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 ANAPC1Q9H1A4 1944 aa23.31■■□□□ 1.32
COL9A3-211ENST00000477612 TICRRQ7Z2Z1 1910 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 LRRIQ3A6PVS8 624 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-211ENST00000477612 CALUO43852 315 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-211ENST00000477612 HMGA1P17096 107 aaKnown RBP23.3■■□□□ 1.32
COL9A3-211ENST00000477612 GABRR2P28476 465 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 HOXD11P31277 338 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-211ENST00000477612 CASP4P49662 377 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 VITQ6UXI7 678 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 TMC2Q8TDI7 906 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 DEPDC1BQ8WUY9 529 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 DNASE1L2Q92874 299 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 PI4K2AQ9BTU6 479 aa23.3■■□□□ 1.32
COL9A3-211ENST00000477612 MYBPHLA2RUH7 354 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 HCRTO43612 131 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 PSMC3P17980 439 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 LMO2P25791 158 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 CDC25CP30307 473 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 MCCD1P59942 119 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-211ENST00000477612 TRPC3Q13507 836 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 MLF2Q15773 248 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-211ENST00000477612 MFSD6LQ8IWD5 586 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 CCDC105Q8IYK2 499 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 FAM200AQ8TCP9 573 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 GIPC2Q8TF65 315 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 SYAP1Q96A49 352 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-211ENST00000477612 ATXN3LQ9H3M9 355 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 ZMYM5Q9UJ78 669 aa23.29■■□□□ 1.32
COL9A3-211ENST00000477612 IKBKBO14920 756 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 F11P03951 625 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 CSH1P0DML2 217 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 CSH2P0DML3 217 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 CYP2F1P24903 491 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 MAGEA11P43364 429 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 CDR1P51861 262 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 MYL6P60660 151 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 RPL10AP62906 217 aaKnown RBP23.28■■□□□ 1.32
COL9A3-211ENST00000477612 ENPEPQ07075 957 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 MAPRE1Q15691 268 aaKnown RBP23.28■■□□□ 1.32
COL9A3-211ENST00000477612 WDR72Q3MJ13 1102 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 TDRD10Q5VZ19 366 aaKnown RBP23.28■■□□□ 1.32
COL9A3-211ENST00000477612 MMS19Q96T76 1030 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 SYT15Q9BQS2 421 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 TRMT61BQ9BVS5 477 aaKnown RBP23.28■■□□□ 1.32
COL9A3-211ENST00000477612 DLGAP2Q9P1A6 1054 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 NME7Q9Y5B8 376 aa23.28■■□□□ 1.32
COL9A3-211ENST00000477612 KIF26AQ9ULI4 1882 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-211ENST00000477612 GOLGA6L4A6NEF3 574 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 SOBPA7XYQ1 873 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 ATP2C2O75185 946 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 VIPR2P41587 438 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 DLG4P78352 724 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 ZCWPW2Q504Y3 356 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 STXBP5Q5T5C0 1151 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 C4orf50Q6ZRC1 276 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 TMEM150AQ86TG1 271 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 SPATA2LQ8IUW3 424 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-211ENST00000477612 ARID3BQ8IVW6 561 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-211ENST00000477612 SPATA20Q8TB22 786 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 IRF7Q92985 503 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 MYRFLQ96LU7 910 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 CEP295NLQ96MC4 621 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 TIGD1Q96MW7 591 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 MRPL45Q9BRJ2 306 aaKnown RBP23.27■■□□□ 1.32
COL9A3-211ENST00000477612 OSBPL6Q9BZF3 934 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 SLITRK6Q9H5Y7 841 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 TASP1Q9H6P5 420 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 CRTAC1Q9NQ79 661 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 OBP2AQ9NY56 170 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 FRMD4BQ9Y2L6 1034 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 SIT1Q9Y3P8 196 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 COL4A3Q01955 1670 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 NCANO14594 1321 aa23.27■■□□□ 1.32
COL9A3-211ENST00000477612 KANSL1LA0AUZ9 987 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 HEPACAM2A8MVW5 462 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 STK25O00506 426 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 NOL4O94818 638 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 GNL1P36915 607 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-211ENST00000477612 GPR15P49685 360 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 TNNC1P63316 161 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 FAM160A1Q05DH4 1040 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 FCHO2Q0JRZ9 810 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms