RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-215	ENST00000474539	IFRD1	O00458	451 aa	Predicted RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	CASQ2	O14958	399 aa	Predicted RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	FGF10	O15520	208 aa	Predicted RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	LGR5	O75473	907 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ASS1	P00966	412 aa	Known RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	APOD	P05090	189 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	RHOC	P08134	193 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	GNS	P15586	552 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ICAM3	P32942	547 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	SHMT1	P34896	483 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	GLUD2	P49448	558 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	FLT3LG	P49771	235 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ARHGDIA	P52565	204 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ATN1	P54259	1190 aa	Predicted RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	CDR2	Q01850	454 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ADCY2	Q08462	1091 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	NR5A1	Q13285	461 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	GKAP1	Q5VSY0	366 aa	Predicted RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	FOXR2	Q6PJQ5	311 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	PRUNE1	Q86TP1	453 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	FBXO16	Q8IX29	292 aa	Predicted RBP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	GAN	Q9H2C0	597 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ARMC7	Q9H6L4	198 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	CYP4F11	Q9HBI6	524 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	KLHL11	Q9NVR0	708 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	KLHL14	Q9P2G3	628 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	ANAPC7	Q9UJX3	599 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	TNFSF13B	Q9Y275	285 aa		4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
CCNL1-215	ENST00000474539	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	CCDC189	A1A4V9	331 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	POTEF	A5A3E0	1075 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	CLTB	P09497	229 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	POTEI	P0CG38	1075 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	INSRR	P14616	1297 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	POLR2E	P19388	210 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	JAK1	P23458	1154 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	HTR1B	P28222	390 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	HNRNPH1	P31943	449 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	BASP1	P80723	227 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	ITGA7	Q13683	1181 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	KIZ	Q2M2Z5	673 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	ZC3H14	Q6PJT7	736 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	POTEG	Q6S5H5	508 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	POTEE	Q6S8J3	1075 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	LRRC52	Q8N7C0	313 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	RBBP8NL	Q8NC74	664 aa	Predicted RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	LRRC8C	Q8TDW0	803 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	SLC22A17	Q8WUG5	538 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	POP5	Q969H6	163 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	CCDC126	Q96EE4	140 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	VCPIP1	Q96JH7	1222 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	ASPSCR1	Q9BZE9	553 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	TLE6	Q9H808	572 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	XAB2	Q9HCS7	855 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	MAN1C1	Q9NR34	630 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	AHSP	Q9NZD4	102 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	HACD3	Q9P035	362 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	MAD2L2	Q9UI95	211 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	PRG3	Q9Y2Y8	225 aa	Predicted RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	MRPS23	Q9Y3D9	190 aa	Known RBP	4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	C2CD2	Q9Y426	696 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	INSL6	Q9Y581	213 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539	ANKRD26	Q9UPS8	1709 aa		4.84	□□□□□ -1.64
CCNL1-215	ENST00000474539		A0A1W2PQJ5	194 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	POTEM	A6NI47	508 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	HNRNPR	O43390	633 aa	Known RBP	4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	NDUFS3	O75489	264 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	CCNDBP1	O95273	360 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	LYPLA2	O95372	231 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	RB1	P06400	928 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	AKT1	P31749	480 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	CCR1	P32246	355 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	GCLM	P48507	274 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	PIK3CG	P48736	1102 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	C21orf59	P57076	290 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	KHDRBS2	Q5VWX1	349 aa	Known RBP	4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	SPOPL	Q6IQ16	392 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	PHLDB3	Q6NSJ2	640 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	MRNIP	Q6NTE8	343 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	VSTM1	Q6UX27	236 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	MMS22L	Q6ZRQ5	1243 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	SLC24A5	Q71RS6	500 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	VSIG10L	Q86VR7	867 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	BEND7	Q8N7W2	519 aa	Predicted RBP	4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	ZNF564	Q8TBZ8	553 aa	Predicted RBP	4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	DENND1A	Q8TEH3	1009 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	PYROXD1	Q8WU10	500 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	STARD8	Q92502	1023 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	DEFB118	Q96PH6	123 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	AGPAT1	Q99943	283 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	SYT15	Q9BQS2	421 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	ABI2	Q9NYB9	513 aa	Predicted RBP	4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	ITM2B	Q9Y287	266 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	ITIH6	Q6UXX5	1313 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	ADGRA2	Q96PE1	1338 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	FAM95C	A0A1B0GW59	222 aa		4.83	□□□□□ -1.64
CCNL1-215	ENST00000474539	RBM47	A0AV96	593 aa	Known RBP	4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms