RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 C4BPAP04003 597 aaKnown RBP16.8■□□□□ 0.28
HDAC6-218ENST00000470942 CYP2F1P24903 491 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 LMO2P25791 158 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 GABRR2P28476 465 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 GNL1P36915 607 aaPredicted RBP16.8■□□□□ 0.28
HDAC6-218ENST00000470942 PSMC1P62191 440 aaKnown RBP16.8■□□□□ 0.28
HDAC6-218ENST00000470942 NCOA4Q13772 614 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 NFIL3Q16649 462 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 IER5LQ5T953 404 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 ASTLQ6HA08 431 aaPredicted RBP16.8■□□□□ 0.28
HDAC6-218ENST00000470942 SMARCD2Q92925 531 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 ELSPBP1Q96BH3 223 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 GSDMAQ96QA5 445 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 MRPL45Q9BRJ2 306 aaKnown RBP16.8■□□□□ 0.28
HDAC6-218ENST00000470942 GPR88Q9GZN0 384 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 KCNH6Q9H252 994 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 CDH9Q9ULB4 789 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 PCDHA5Q9Y5H7 936 aa16.8■□□□□ 0.28
HDAC6-218ENST00000470942 KRBA1A5PL33 1030 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 MAPK13O15264 365 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 KINO60870 393 aaKnown RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 GADD45BO75293 160 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 TACC1O75410 805 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 STAU1O95793 577 aaKnown RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 KRT13P13646 458 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 PSMC2P35998 433 aaKnown RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ANP32AP39687 249 aaKnown RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 GPR15P49685 360 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 VAMP7P51809 220 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 RPL10AP62906 217 aaKnown RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 CLDN10P78369 228 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 DDR2Q16832 855 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 CCDC142Q17RM4 750 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ZNF699Q32M78 642 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ARHGAP15Q53QZ3 475 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ZNF667Q5HYK9 610 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ZNF658Q5TYW1 1059 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 SDHAF4Q5VUM1 108 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 C4orf50Q6ZRC1 276 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 SCN4BQ8IWT1 228 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 FAM186BQ8IYM0 893 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ZSCAN18Q8TBC5 510 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 FAM122AQ96E09 287 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ASB16Q96NS5 453 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 GCNAQ96QF7 691 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 PKMYT1Q99640 499 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ABCB6Q9NP58 842 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ARHGEF3Q9NR81 526 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 CHMP5Q9NZZ3 219 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 MAGEC2Q9UBF1 373 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 MAGED2Q9UNF1 606 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-218ENST00000470942 MUC6Q6W4X9 2439 aa16.79■□□□□ 0.28
HDAC6-218ENST00000470942 ZNF638Q14966 1978 aaKnown RBP16.78■□□□□ 0.28
HDAC6-218ENST00000470942 DENND4CQ5VZ89 1909 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 IKBKBO14920 756 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 AKAP3O75969 853 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 VNN1O95497 513 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 FAM163BP0C2L3 166 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 NPR3P17342 541 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 FCARP24071 287 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 PRCPP42785 496 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 CLCN5P51795 746 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 GRM2Q14416 872 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 MAPRE1Q15691 268 aaKnown RBP16.78■□□□□ 0.28
HDAC6-218ENST00000470942 STXBP5Q5T5C0 1151 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 GPR158Q5T848 1215 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 FAM171BQ6P995 826 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 INTS8Q75QN2 995 aaKnown RBP16.78■□□□□ 0.28
HDAC6-218ENST00000470942 GAREM2Q75VX8 874 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 GPIHBP1Q8IV16 184 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 TMEM105Q8N8V8 129 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 STKLD1Q8NE28 680 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 MYLPFQ96A32 169 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 ELMO3Q96BJ8 720 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 XYLT2Q9H1B5 865 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 CRTAC1Q9NQ79 661 aa16.78■□□□□ 0.28
HDAC6-218ENST00000470942 A8MXQ7 604 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CETN3O15182 167 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 TRIM49P0CI25 452 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 TRIM49CP0CI26 452 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CSH1P0DML2 217 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CSH2P0DML3 217 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CDC25CP30307 473 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 VIPR2P41587 438 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CYP4F8P98187 520 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 PFKPQ01813 784 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CYP27A1Q02318 531 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 SGSM1Q2NKQ1 1148 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 EDRF1Q3B7T1 1238 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 ZACNQ401N2 412 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CFAP221Q4G0U5 840 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 ZCWPW2Q504Y3 356 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 MDH1BQ5I0G3 518 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 CWF19L1Q69YN2 538 aaKnown RBP16.77■□□□□ 0.28
HDAC6-218ENST00000470942 ISM2Q6H9L7 571 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 SCARA5Q6ZMJ2 495 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 SV2AQ7L0J3 742 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 FUBP3Q96I24 572 aaKnown RBP eCLIP16.77■□□□□ 0.28
HDAC6-218ENST00000470942 PRRX2Q99811 253 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 TSG101Q99816 390 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms