RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZMYM5Q9UJ78 669 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 ZNF233A6NK53 670 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 PRAMEF12O95522 483 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 CCNE1P24864 410 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 HOXD13P35453 343 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 KPNA1P52294 538 aaPredicted RBP17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 ASIC1P78348 528 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 MYL7Q01449 175 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 SURF1Q15526 300 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 INTS6LQ5JSJ4 861 aaKnown RBP17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 TOP6BLQ8N6T0 577 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 BPIFB1Q8TDL5 484 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 ATRIPQ8WXE1 791 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 ANKRD36BP1Q96IX9 119 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 PI4K2AQ9BTU6 479 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 MAGEF1Q9HAY2 307 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 KIAA1586Q9HCI6 787 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 ABCB6Q9NP58 842 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 SNX9Q9Y5X1 595 aa17.81■□□□□ 0.44
CCDC28B-204ENST00000469003 SLC38A8A6NNN8 435 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 LILRB5O75023 590 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 PRPF40AO75400 957 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 CHRNB1P11230 501 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 HMGA1P17096 107 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 DDX6P26196 483 aaKnown RBP eCLIP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 LHX1P48742 406 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 NLRP12P59046 1061 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 PLCB2Q00722 1185 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 MYO1EQ12965 1108 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 FAM26FQ5R3K3 315 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 FOXD4L5Q5VV16 416 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 LMBRD2Q68DH5 695 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 TSSK4Q6SA08 328 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 EPM2AIP1Q7L775 607 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 OSTM1Q86WC4 334 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 CBWD2Q8IUF1 395 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 HSCBQ8IWL3 235 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 KIAA2013Q8IYS2 634 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 ZNF507Q8TCN5 953 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 FOXD4L4Q8WXT5 416 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 RUBCNQ92622 972 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 PKMYT1Q99640 499 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 C7orf25Q9BPX7 421 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 HINFPQ9BQA5 517 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 SLC46A2Q9BY10 475 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 FAM126AQ9BYI3 521 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 HSPBP1Q9NZL4 362 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 R3HCC1Q9Y3T6 440 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 OBSL1O75147 1896 aa17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 KIF26AQ9ULI4 1882 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-204ENST00000469003 UBE4BO95155 1302 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 PTPRJQ12913 1337 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 MYBPHLA2RUH7 354 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 GABRDO14764 452 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 F13A1P00488 732 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 TNNC2P02585 160 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 F11P03951 625 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 CSH1P0DML2 217 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 CSH2P0DML3 217 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 ZSCAN22P10073 491 aaPredicted RBP17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 ACAT1P24752 427 aaKnown RBP17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 PCSK1P29120 753 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 SOX9P48436 509 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 GPR15P49685 360 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 RPL10AP62906 217 aaKnown RBP17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 DPH6Q7L8W6 267 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 TMEM150AQ86TG1 271 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 RALGPS2Q86X27 583 aaPredicted RBP17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 ADGRF2Q8IZF7 708 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 CMTM8Q8IZV2 173 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 CELF5Q8N6W0 485 aaKnown RBP17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 OR5B17Q8NGF7 314 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 ZFYVE19Q96K21 471 aa17.79■□□□□ 0.44
CCDC28B-204ENST00000469003 DNAH14Q0VDD8 3507 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 OTOGLQ3ZCN5 2332 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 SOBPA7XYQ1 873 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 SPECC1L-ADORA2AF8WAN1 911 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 POLR2DO15514 142 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 TGFB1I1O43294 461 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 HSP90AA1P07900 732 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 TDGF1P13385 188 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 CYP2F1P24903 491 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 CTHP32929 405 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 CCR3P51677 355 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 EHHADHQ08426 723 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 LRRC32Q14392 662 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 PPP2R5DQ14738 602 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 DUOXA2Q1HG44 320 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 SOWAHAQ2M3V2 549 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 UNC13DQ70J99 1090 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 LIMS2Q7Z4I7 341 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 WDR49Q8IV35 697 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 HPDLQ96IR7 371 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 THG1LQ9NWX6 298 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 GTSE1Q9NYZ3 720 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 UXTQ9UBK9 157 aaPredicted RBP17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 GTF3C4Q9UKN8 822 aa17.78■□□□□ 0.44
CCDC28B-204ENST00000469003 ZNF638Q14966 1978 aaKnown RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 NOL4O94818 638 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 AVPR1AP37288 418 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms