RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 BRAFP15056 766 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 ANXA11P50995 505 aaKnown RBP4.95□□□□□ -1.62
USP40-209ENST00000452724 MC2RQ01718 297 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 CCSAPQ6IQ19 270 aaPredicted RBP4.95□□□□□ -1.62
USP40-209ENST00000452724 PSD4Q8NDX1 1056 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 POC1BQ8TC44 478 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 FUBP1Q96AE4 644 aaKnown RBP4.95□□□□□ -1.62
USP40-209ENST00000452724 APIPQ96GX9 242 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 SUCLG2Q96I99 432 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 Q96MF0 132 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 DUSP26Q9BV47 211 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 DPH1Q9BZG8 443 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 ARNT2Q9HBZ2 717 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 LRIT1Q9P2V4 623 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 TLK1Q9UKI8 766 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 FAM50BQ9Y247 325 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 E7ENX8 843 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 MYO1CO00159 1063 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 BTN3A1O00481 513 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 APAF1O14727 1248 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 PQBP1O60828 265 aaKnown RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 MAP4K4O95819 1239 aaPredicted RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 MYL1P05976 194 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 CHRM3P20309 590 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 MPLP40238 635 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 CLK3P49761 638 aaKnown RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 VAV2P52735 878 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 SUMO3P55854 103 aaPredicted RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 RPS7P62081 194 aaKnown RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 TAP2Q03519 686 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 DYRK1AQ13627 763 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 SAFBQ15424 915 aaKnown RBP eCLIP4.94□□□□□ -1.62
USP40-209ENST00000452724 CNGA2Q16280 664 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 PREPLQ4J6C6 727 aaPredicted RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 AMOTQ4VCS5 1084 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 LMBRD2Q68DH5 695 aaPredicted RBP4.94□□□□□ -1.62
USP40-209ENST00000452724 TAF2Q6P1X5 1199 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 FBXO42Q6P3S6 717 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 SLC30A10Q6XR72 485 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 Q6ZNX1 250 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 GPR149Q86SP6 731 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 ADGRG5Q8IZF4 528 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 SIMC1Q8NDZ2 872 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 PJA1Q8NG27 643 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 TMEM125Q96AQ2 219 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 NUP62CLQ9H1M0 184 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 ZNF287Q9HBT7 754 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 KIAA1586Q9HCI6 787 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 CPNE7Q9UBL6 633 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 HESX1Q9UBX0 185 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 OGDHLQ9ULD0 1010 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 TMX2Q9Y320 296 aa4.94□□□□□ -1.62
USP40-209ENST00000452724 TBC1D4O60343 1298 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 C1RP00736 705 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SLC11A2P49281 568 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 TOB1P50616 345 aaPredicted RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 UCP3P55916 312 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 C21orf58P58505 322 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 MRPS35P82673 323 aaKnown RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 FPGSQ05932 587 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SLC13A2Q13183 592 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 CD300EQ496F6 205 aaPredicted RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 LONRF3Q496Y0 759 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SP5Q6BEB4 398 aaPredicted RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 TMPRSS9Q7Z410 1059 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 CCDC146Q8IYE0 955 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 KRT78Q8N1N4 520 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SLC15A4Q8N697 577 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 DNAJC5GQ8N7S2 189 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SNX19Q92543 992 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 PTCD3Q96EY7 689 aaKnown RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 SLC46A1Q96NT5 459 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 HEPHQ9BQS7 1158 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SPATA5L1Q9BVQ7 753 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 APOL5Q9BWW9 433 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 BTBD1Q9H0C5 482 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 SMOC2Q9H3U7 446 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 UNKLQ9H9P5 680 aaKnown RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 SMURF2Q9HAU4 748 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 STK32BQ9NY57 414 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 XPR1Q9UBH6 696 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 AFF4Q9UHB7 1163 aaKnown RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.93□□□□□ -1.62
USP40-209ENST00000452724 RAD54BQ9Y620 910 aa4.93□□□□□ -1.62
USP40-209ENST00000452724 TRGV11A0A075B6L2 103 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 A0A087WWL8 130 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 ORC4O43929 436 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 SOAT2O75908 522 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 PHKG2P15735 406 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 ITGALP20701 1170 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 LMO1P25800 156 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 PLA2G5P39877 138 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 VIPR2P41587 438 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 GCLCP48506 637 aaPredicted RBP4.92□□□□□ -1.62
USP40-209ENST00000452724 FMO1Q01740 532 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 SCAPQ12770 1279 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 CTBP1Q13363 440 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 RAB32Q13637 225 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 BOP1Q14137 746 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms