RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 MAPRE1Q15691 268 aaKnown RBP12.33□□□□□ -0.43
SCN9A-204ENST00000452182 PLPP4Q5VZY2 271 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 DCP1BQ8IZD4 617 aaKnown RBP12.33□□□□□ -0.43
SCN9A-204ENST00000452182 SLC4A11Q8NBS3 891 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 B3GALNT2Q8NCR0 500 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 MYCBPAPQ8TBZ2 947 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 BAP1Q92560 729 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 KLHL5Q96PQ7 755 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 SPAG5Q96R06 1193 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 TWNKQ96RR1 684 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 SYT15Q9BQS2 421 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 ELOVL4Q9GZR5 314 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 NLRC4Q9NPP4 1024 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 MAFFQ9ULX9 164 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 CAPN11Q9UMQ6 739 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 PCDHB4Q9Y5E5 795 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 HCRTO43612 131 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 ABLIM3O94929 683 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 GYPCP04921 128 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 PDGFRBP09619 1106 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 PTPN1P18031 435 aaKnown RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 ACAT1P24752 427 aaKnown RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 OR1D2P34982 312 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 STAT1P42224 750 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 ROR1Q01973 937 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 NFE2Q16621 373 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 TPGS2Q68CL5 300 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 LRRTM3Q86VH5 581 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 RBBP8NLQ8NC74 664 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 ZNF461Q8TAF7 563 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 C2orf15Q8WU43 125 aaKnown RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 PPP2R3CQ969Q6 453 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 NUCKS1Q9H1E3 243 aaKnown RBP12.33□□□□□ -0.44
SCN9A-204ENST00000452182 DPEP3Q9H4B8 488 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 CRTAC1Q9NQ79 661 aa12.33□□□□□ -0.44
SCN9A-204ENST00000452182 SZT2Q5T011 3432 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 WDR27A2RRH5 827 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 MYBPHLA2RUH7 354 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 RNF225M0QZC1 329 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ADAM12O43184 909 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 KRT5P13647 590 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 RPL17P18621 184 aaKnown RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 SOX5P35711 763 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 BPIFB4P59827 614 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ZBED6P86452 979 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 TBX2Q13207 712 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ZNF394Q53GI3 561 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ACOT1Q86TX2 421 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 PPFIBP1Q86W92 1011 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ZNF397Q8NF99 534 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 SYN2Q92777 582 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 FUBP3Q96I24 572 aaKnown RBP eCLIP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 TMEM209Q96SK2 561 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 CDCA3Q99618 268 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 NSUN3Q9H649 340 aaKnown RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ABCB6Q9NP58 842 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 HSFX1Q9UBD0 423 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 GTF3C4Q9UKN8 822 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 LUC7L2Q9Y383 392 aaKnown RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 ARIH1Q9Y4X5 557 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-204ENST00000452182 PCDHGC5Q9Y5F6 944 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 PTPRDP23468 1912 aa12.32□□□□□ -0.44
SCN9A-204ENST00000452182 MTCL1Q9Y4B5 1905 aaKnown RBP12.31□□□□□ -0.44
SCN9A-204ENST00000452182 CYP26A1O43174 497 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 ATP2C2O75185 946 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 CCDC172P0C7W6 258 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 VDRP11473 427 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 CPB1P15086 417 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 ATF2P15336 505 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 KLRC2P26717 231 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 CA8P35219 290 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 CLCN1P35523 988 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 FXR1P51114 621 aaKnown RBP eCLIP12.31□□□□□ -0.44
SCN9A-204ENST00000452182 PSMC1P62191 440 aaKnown RBP12.31□□□□□ -0.44
SCN9A-204ENST00000452182 PTK2Q05397 1052 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 ARID5BQ14865 1188 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 CFAP221Q4G0U5 840 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 SLC39A12Q504Y0 691 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 ARHGAP17Q68EM7 881 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 LILRA6Q6PI73 481 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 C4orf50Q6ZRC1 276 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 TMC6Q7Z403 805 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 SPPL2BQ8TCT7 592 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 PCED1BQ96HM7 432 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 HEXIM2Q96MH2 286 aaKnown RBP12.31□□□□□ -0.44
SCN9A-204ENST00000452182 AIPL1Q9NZN9 384 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 AFF4Q9UHB7 1163 aaKnown RBP12.31□□□□□ -0.44
SCN9A-204ENST00000452182 MTCH2Q9Y6C9 303 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 PLXNA3P51805 1871 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 MYO9BQ13459 2157 aa12.31□□□□□ -0.44
SCN9A-204ENST00000452182 LRRC53A6NM62 1247 aa12.3□□□□□ -0.44
SCN9A-204ENST00000452182 TGM5O43548 720 aa12.3□□□□□ -0.44
SCN9A-204ENST00000452182 CLASP2O75122 1294 aaKnown RBP12.3□□□□□ -0.44
SCN9A-204ENST00000452182 TPM1P09493 284 aa12.3□□□□□ -0.44
SCN9A-204ENST00000452182 OR4Q2P0C623 313 aa12.3□□□□□ -0.44
SCN9A-204ENST00000452182 PNMA6AP0CW24 399 aaPredicted RBP12.3□□□□□ -0.44
SCN9A-204ENST00000452182 CASP14P31944 242 aa12.3□□□□□ -0.44
SCN9A-204ENST00000452182 USP8P40818 1118 aa12.3□□□□□ -0.44
SCN9A-204ENST00000452182 CLCN4P51793 760 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms