RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 OSTM1Q86WC4 334 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 DEPDC1BQ8WUY9 529 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 IRF7Q92985 503 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 LRRC3Q9BY71 257 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 ZNF334Q9HCZ1 680 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-210ENST00000449684 TMLHEQ9NVH6 421 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 MAGED2Q9UNF1 606 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-210ENST00000449684 WDFY4Q6ZS81 3184 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 GABRDO14764 452 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 ZNF263O14978 683 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 RHOBTB3O94955 611 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 PDGFRBP09619 1106 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 CSH1P0DML2 217 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 CSH2P0DML3 217 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 FCARP24071 287 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 GDI1P31150 447 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 ATICP31939 592 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 GNL1P36915 607 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-210ENST00000449684 CASP4P49662 377 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 STARD6P59095 220 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 UBXN2BQ14CS0 331 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 MAPRE1Q15691 268 aaKnown RBP16.61■□□□□ 0.25
LIMS1-210ENST00000449684 POTEHQ6S545 545 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 GAREM2Q75VX8 874 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 SLC9A9Q8IVB4 645 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 SCN4BQ8IWT1 228 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 CCDC105Q8IYK2 499 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 DTWD2Q8NBA8 298 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 OR6B3Q8NGW1 331 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 SYAP1Q96A49 352 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-210ENST00000449684 SYT15Q9BQS2 421 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 KCTD10Q9H3F6 313 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 ABCB6Q9NP58 842 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 FAM86C1Q9NVL1 165 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 MAGEC2Q9UBF1 373 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-210ENST00000449684 NXF1Q9UBU9 619 aaKnown RBP16.61■□□□□ 0.25
LIMS1-210ENST00000449684 CDH9Q9ULB4 789 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 MAPK8IP1Q9UQF2 711 aa16.61■□□□□ 0.25
LIMS1-210ENST00000449684 KANSL1LA0AUZ9 987 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 MYBPHLA2RUH7 354 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 HEPACAM2A8MVW5 462 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 NRG2O14511 850 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-210ENST00000449684 DCNP07585 359 aaKnown RBP16.6■□□□□ 0.25
LIMS1-210ENST00000449684 CYP2F1P24903 491 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 MYL6P60660 151 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 PSMC1P62191 440 aaKnown RBP16.6■□□□□ 0.25
LIMS1-210ENST00000449684 CYP4F8P98187 520 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 CYP27A1Q02318 531 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 DDR2Q16832 855 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 STXBP5Q5T5C0 1151 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 TPRG1Q6ZUI0 275 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 GPIHBP1Q8IV16 184 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 ARID3BQ8IVW6 561 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-210ENST00000449684 MFSD6LQ8IWD5 586 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 PARD3BQ8TEW8 1205 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 ZNF516Q92618 1163 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 DNASE1L2Q92874 299 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 FOXQ1Q9C009 403 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 TASP1Q9H6P5 420 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 TRPV4Q9HBA0 871 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 HEBP1Q9NRV9 189 aa16.6■□□□□ 0.25
LIMS1-210ENST00000449684 HOOK1Q9UJC3 728 aaKnown RBP16.6■□□□□ 0.25
LIMS1-210ENST00000449684 MRPS17Q9Y2R5 130 aaKnown RBP16.6■□□□□ 0.25
LIMS1-210ENST00000449684 LRRIQ3A6PVS8 624 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 NCAM2O15394 837 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 WARSP23381 471 aaKnown RBP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 LMO2P25791 158 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 RPL13P26373 211 aaKnown RBP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 GPR15P49685 360 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 MRE11P49959 708 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 KCNB1Q14721 858 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 ZNF699Q32M78 642 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 SDHAF4Q5VUM1 108 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 VITQ6UXI7 678 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 ZNF852Q6ZMS4 543 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 PJA1Q8NG27 643 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 CSGALNACT1Q8TDX6 532 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 KBTBD7Q8WVZ9 684 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 MRPS31Q92665 395 aaKnown RBP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 FUBP3Q96I24 572 aaKnown RBP eCLIP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 NELL2Q99435 816 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 BCO2Q9BYV7 579 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 DMAC2Q9NW81 257 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 RMND1Q9NWS8 449 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 UXTQ9UBK9 157 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-210ENST00000449684 ZMYM5Q9UJ78 669 aa16.59■□□□□ 0.25
LIMS1-210ENST00000449684 FAM170BA6NMN3 283 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 A8MXQ7 604 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 MAN2B1O00754 1011 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 HCRTO43612 131 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 ATP2C2O75185 946 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 TACC1O75410 805 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 SMC2O95347 1197 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 FAM163BP0C2L3 166 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 KRT13P13646 458 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 P4HA1P13674 534 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 CD72P21854 359 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 NR2F2P24468 414 aa16.58■□□□□ 0.24
LIMS1-210ENST00000449684 ANXA13P27216 316 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms