RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 EXOC7Q9UPT5 735 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 PCDHA10Q9Y5I2 948 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 HCRTO43612 131 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 POTEJP0CG39 1038 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 ETS2P15036 469 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 GLRA2P23416 452 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 IL1R2P27930 398 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 ACTR2P61160 394 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 GTF2BQ00403 316 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 FAAP100Q0VG06 881 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 OLIG2Q13516 323 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 CUL2Q13617 745 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 HIF1AQ16665 826 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 DENND1BQ6P3S1 775 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 DARS2Q6PI48 645 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 SPDYE1Q8NFV5 336 aaPredicted RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 ZNF75CPQ92670 426 aaPredicted RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 PIWIL1Q96J94 861 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 APOL6Q9BWW8 343 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 IMPG2Q9BZV3 1241 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 IQCGQ9H095 443 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 SEPT10Q9P0V9 454 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 UVRAGQ9P2Y5 699 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 XPO7Q9UIA9 1087 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 INPP5FQ9Y2H2 1132 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 USH1CQ9Y6N9 552 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 COL14A1Q05707 1796 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 DPPA5A6NC42 116 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 ARHGAP42A6NI28 874 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 E5RJQ4 531 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 TXNDC9O14530 226 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 SMIM24O75264 130 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 AP1G2O75843 785 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 GZMAP12544 262 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 PSMC1P62191 440 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 EN1Q05925 392 aaPredicted RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 NR1H3Q13133 447 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 THOC5Q13769 683 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 PLCB4Q15147 1175 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 ARMC9Q7Z3E5 817 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 PRPF39Q86UA1 669 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 C7orf31Q8N865 590 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 CFAP61Q8NHU2 1237 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 WDR60Q8WVS4 1066 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 RANBP17Q9H2T7 1088 aaKnown RBP9.09□□□□□ -0.95
USP40-203ENST00000427112 FAM49BQ9NUQ9 324 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 SLC9A2Q9UBY0 812 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 PCDHB2Q9Y5E7 798 aa9.09□□□□□ -0.95
USP40-203ENST00000427112 WNT10BO00744 389 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 GYG2O15488 501 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 TOM1L1O75674 476 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 MT-ND3P03897 115 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PGK2P07205 417 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 APRTP07741 180 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 GCAP28676 217 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ELK3P41970 407 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 GRIA1P42261 906 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ATXN1P54253 815 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 MTFR1Q15390 333 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 WLSQ5T9L3 541 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 TMEM154Q6P9G4 183 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 POTEAQ6S8J7 498 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ARHGAP27Q6ZUM4 889 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ARMCX6Q7L4S7 300 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 TRABD2AQ86V40 505 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PPP1R14CQ8TAE6 165 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 FEZF2Q8TBJ5 459 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP40-203ENST00000427112 ATP6V0A4Q9HBG4 840 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PCMTD2Q9NV79 361 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 DONSONQ9NYP3 566 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 CNOT7Q9UIV1 285 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 MAPK13O15264 365 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 TMEM63AO94886 807 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 UNC5CO95185 931 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 MYL2P10916 166 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 UNGP13051 313 aaPredicted RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 HSPA6P17066 643 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ALDH3A1P30838 453 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PTDSS1P48651 473 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 GPX6P59796 221 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 NOMO3P69849 1222 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ZNF252P-AS1Q0IIN9 211 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PTK6Q13882 451 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 EMC2Q15006 297 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PPP2R5EQ16537 467 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 KBTBD12Q3ZCT8 623 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 SPOCD1Q6ZMY3 1216 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ARID3BQ8IVW6 561 aaPredicted RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 C12orf29Q8N999 325 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 RNF149Q8NC42 400 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 GRK7Q8WTQ7 553 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 CCDC97Q96F63 343 aaPredicted RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 NAF1Q96HR8 494 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 MAGEB18Q96M61 343 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 CFAP57Q96MR6 1250 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 RIT2Q99578 217 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 WHRNQ9P202 907 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 DIS3Q9Y2L1 958 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 SCN9AQ15858 1988 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms