RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 FAM111BQ6SJ93 734 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 Q6ZRM9 215 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 AACSQ86V21 672 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 APOBEC3FQ8IUX4 373 aaKnown RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 CMTM4Q8IZR5 234 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 LILRA3Q8N6C8 439 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 SPATA5Q8NB90 893 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 REPS2Q8NFH8 660 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 MDM1Q8TC05 714 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 TEKT1Q969V4 418 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 PRMT6Q96LA8 375 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF512Q96ME7 567 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 CEP89Q96ST8 783 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 LRRCC1Q9C099 1032 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 RWDD1Q9H446 243 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 IFT122Q9HBG6 1241 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 IL1RAPL2Q9NP60 686 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 DBNLQ9UJU6 430 aaKnown RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 PCDHGA2Q9Y5H1 932 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 K7ESF4 209 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 XPOTO43592 962 aaKnown RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 AKR1B10O60218 316 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 MAP4K4O95819 1239 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 S100BP04271 92 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 FKBP1BP68106 108 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 GSTO1P78417 241 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 FAPQ12884 760 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 CRHR2Q13324 411 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 HDAC1Q13547 482 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 TNFAIP1Q13829 316 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 PRKD1Q15139 912 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 USP39Q53GS9 565 aaKnown RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 CCDC178Q5BJE1 867 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 FKBP15Q5T1M5 1219 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 FKBP1CQ5VVH2 108 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 Q6ZVL8 140 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 EXOC6Q8TAG9 804 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 RIN2Q8WYP3 895 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 EXTL1Q92935 676 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 RAB24Q969Q5 203 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 ARL8AQ96BM9 186 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 GCC1Q96CN9 775 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 GPR20Q99678 358 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 C1QTNF3Q9BXJ4 246 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 ACE2Q9BYF1 805 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 GGA3Q9NZ52 723 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 TMOD2Q9NZR1 351 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF70Q9UC06 446 aaPredicted RBP2.97□□□□□ -1.93
VPS13A-208ENST00000423463 ABCF2Q9UG63 623 aa2.97□□□□□ -1.93
VPS13A-208ENST00000423463 SCN9AQ15858 1988 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 ASTN2O75129 1339 aaPredicted RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 CELF2O95319 508 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 ATP5JP18859 108 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 PRDX5P30044 214 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 NF2P35240 595 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MCAMP43121 646 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MTNR1BP49286 362 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 PTTG1IPP53801 180 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MRPS9P82933 396 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 HHEXQ03014 270 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 ACAP2Q15057 778 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 TTF1Q15361 905 aaPredicted RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 DEFB115Q30KQ5 88 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 SUPT20HL1Q3ZLR7 823 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 HS1BP3Q53T59 392 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 SYDE2Q5VT97 1194 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 CST9Q5W186 159 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 APOBEC3HQ6NTF7 200 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 AMOTL1Q8IY63 956 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 DNAJC5GQ8N7S2 189 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 CDCA5Q96FF9 252 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 RAX2Q96IS3 184 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 KRTAP9-3Q9BYQ3 159 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 CPEB1Q9BZB8 566 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 DEFB129Q9H1M3 183 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 NELFAQ9H3P2 528 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 TDRD3Q9H7E2 651 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MKS1Q9NXB0 559 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 RAI14Q9P0K7 980 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 KLHL42Q9P2K6 505 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 DNM3Q9UQ16 869 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 TSC22D4Q9Y3Q8 395 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 SPEF2Q9C093 1822 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 SRCAPQ6ZRS2 3230 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 GAKO14976 1311 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 ADAMTSL1Q8N6G6 1762 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 GPR75-ASB3A0A0A6YYF3 556 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 ADM5C9JUS6 153 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 LTA4HP09960 611 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MECOMQ03112 1051 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 PPP3CAQ08209 521 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MALLQ13021 153 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 PCBP2Q15366 365 aaKnown RBP eCLIP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MST1LQ2TV78 715 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 PRAMEF14Q5SWL7 426 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 ANKS6Q68DC2 871 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 MAMDC4Q6UXC1 1216 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 FAM83AQ86UY5 434 aa2.96□□□□□ -1.94
VPS13A-208ENST00000423463 DZIP1Q86YF9 867 aaKnown RBP2.96□□□□□ -1.94
VPS13A-208ENST00000423463 C1orf162Q8NEQ5 155 aaPredicted RBP2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms