RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 USP17L6PQ6QN14 398 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TFB1MQ8WVM0 346 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 S100A13Q99584 98 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ZCCHC2Q9C0B9 1178 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TRIT1Q9H3H1 467 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SOX13Q9UN79 622 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 AAR2Q9Y312 384 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CPDO75976 1380 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SMIM31A0A1B0GVY4 71 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SRP72O76094 671 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 RHOBTB1O94844 696 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CELF2O95319 508 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 EYA4O95677 639 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CNPP09543 421 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PDGFRBP09619 1106 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 THPOP40225 353 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 NEK10Q6ZWH5 1172 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 DSG4Q86SJ6 1040 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 COMMD2Q86X83 199 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 KCTD17Q8N5Z5 321 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PIGBQ92521 554 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PPP1R36Q96LQ0 422 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CNPY3Q9BT09 278 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 EPS8L2Q9H6S3 715 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 EXO5Q9H790 373 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 NMRK2Q9NPI5 230 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SAMSN1Q9NSI8 373 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ABI2Q9NYB9 513 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 RNF112Q9ULX5 631 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 IGSF9BQ9UPX0 1349 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MAGI2Q86UL8 1455 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CYP2D7A0A087X1C5 515 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SAC3D1A6NKF1 404 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 POTECB2RU33 542 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 NDUFS2O75306 463 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 S100GP29377 79 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RXRGP48443 463 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ATF7IP2Q5U623 682 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SUSD4Q5VX71 490 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MRNIPQ6NTE8 343 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MTSS1LQ765P7 747 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 LRRC8DQ7L1W4 858 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 DENND6AQ8IWF6 608 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 GRAMD1CQ8IYS0 662 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SEPT1Q8WYJ6 367 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RFFLQ8WZ73 363 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SERAC1Q96JX3 654 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RGS18Q9NS28 235 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 FAM47DPA6NHR8 397 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 POTEMA6NI47 508 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 KCNQ3O43525 872 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MFAP3LO75121 409 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SESN2P58004 480 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF200P98182 395 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SGO1Q5FBB7 561 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 EFCAB12Q6NXP0 572 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 LDHDQ86WU2 507 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ANKRD13AQ8IZ07 590 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 OSBPL5Q9H0X9 879 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 PADI4Q9UM07 663 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 NR2E3Q9Y5X4 410 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 GMNCA6NCL1 334 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MGAT4DA6NG13 374 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 VPS26AO75436 327 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SEC24BO95487 1268 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ALDH18A1P54886 795 aaKnown RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MAGOHP61326 146 aaKnown RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CASP8Q14790 479 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 IFNLR1Q8IU57 520 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 UNC45BQ8IWX7 931 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ASCC2Q9H1I8 757 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RSAD1Q9HA92 442 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SNX24Q9Y343 169 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 TM9SF1O15321 606 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ECDO95905 644 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CYP2C9P11712 490 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 TNNI3P19429 210 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 PTPN3P26045 913 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 HUNKP57058 714 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 C1DQ13901 141 aaKnown RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 TOMM20Q15388 145 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SLFNL1Q499Z3 407 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 SYCP2LQ5T4T6 812 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ATAD3BQ5T9A4 648 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF677Q86XU0 584 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 AGR3Q8TD06 166 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 THAP11Q96EK4 314 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 KCNK16Q96T55 309 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 FRMD8Q9BZ67 464 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RAB6BQ9NRW1 208 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 KANSL3Q9P2N6 904 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ADGRL2O95490 1459 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 HS6ST1O60243 411 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CYP21A2P08686 494 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RPS7P62081 194 aaKnown RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 GFPT1Q06210 699 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 FAM45BPQ6NSW5 357 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MAGEC3Q8TD91 643 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms