RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ARNT2Q9HBZ2 717 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 FAM53CQ9NYF3 392 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 FZD1Q9UP38 647 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 SSC5DA1L4H1 1573 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 COL2A1P02458 1487 aaPredicted RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 TTC41PQ6P2S7 1318 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 CCL15-CCL14A0A0B4J2E2 113 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 CTNND1O60716 968 aaKnown RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 GAAP10253 952 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 LLGL1Q15334 1064 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 CCL15Q16663 113 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 ARHGAP29Q52LW3 1261 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 MCTP2Q6DN12 878 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 CNKSR3Q6P9H4 555 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 USP45Q70EL2 814 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 OVCH2Q7RTZ1 564 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 FOXP4Q8IVH2 680 aaPredicted RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 LILRA3Q8N6C8 439 aaPredicted RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 SH3RF3Q8TEJ3 882 aaPredicted RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 ZKSCAN4Q969J2 545 aaPredicted RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 WDR92Q96MX6 357 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 AS3MTQ9HBK9 375 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 ZCCHC17Q9NP64 241 aaKnown RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 PIH1D3Q9NQM4 214 aaKnown RBP7.41□□□□□ -1.22
USP40-202ENST00000409945 ATRNL1Q5VV63 1379 aa7.41□□□□□ -1.22
USP40-202ENST00000409945 PEX14O75381 377 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 HMGCRP04035 888 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 ZFYP08048 801 aaPredicted RBP7.4□□□□□ -1.22
USP40-202ENST00000409945 GLDCP23378 1020 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 RPL13P26373 211 aaKnown RBP7.4□□□□□ -1.22
USP40-202ENST00000409945 ADSLP30566 484 aaPredicted RBP7.4□□□□□ -1.22
USP40-202ENST00000409945 RHBDL3P58872 404 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 KIF22Q14807 665 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 NOMO1Q15155 1222 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 ANO4Q32M45 955 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 TRIM68Q6AZZ1 485 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 BTNL9Q6UXG8 535 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 FASTKD5Q7L8L6 764 aaKnown RBP7.4□□□□□ -1.22
USP40-202ENST00000409945 SCYL3Q8IZE3 742 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 MIGA1Q8NAN2 632 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 WDR48Q8TAF3 677 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 LRFN3Q9BTN0 628 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 ZNF112Q9UJU3 913 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 DOCK2Q92608 1830 aa7.4□□□□□ -1.22
USP40-202ENST00000409945 C2orf78A6NCI8 922 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 HDAC1Q13547 482 aaPredicted RBP7.4□□□□□ -1.23
USP40-202ENST00000409945 PKN2Q16513 984 aaKnown RBP7.4□□□□□ -1.23
USP40-202ENST00000409945 MUM1L1Q5H9M0 696 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 ANKRD45Q5TZF3 282 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 MCTP1Q6DN14 999 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 CXXC5Q7LFL8 322 aaKnown RBP7.4□□□□□ -1.23
USP40-202ENST00000409945 MAPKAPK5Q8IW41 473 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 SLC39A13Q96H72 371 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 KATNBL1Q9H079 304 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 CD320Q9NPF0 282 aa7.4□□□□□ -1.23
USP40-202ENST00000409945 FLT1P17948 1338 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 ZNF532Q9HCE3 1301 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 DDTLA6NHG4 134 aaPredicted RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 CXCL11O14625 94 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 OFD1O75665 1012 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 ASNSP08243 561 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 MED14OSP0DP75 135 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 IRX6P78412 446 aaPredicted RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 PCOLCEQ15113 449 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 UBE3CQ15386 1083 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GLB1L2Q8IW92 636 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 MVB12AQ96EY5 273 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 ERO1AQ96HE7 468 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 DDX4Q9NQI0 724 aaKnown RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 ING3Q9NXR8 418 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 SAE1Q9UBE0 346 aaPredicted RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 SMG5Q9UPR3 1016 aaKnown RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 ZHX2Q9Y6X8 837 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 RFX7Q2KHR2 1363 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GOLGA6CA6NDK9 693 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GOLGA6BA6NDN3 693 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GOLGA6DP0CG33 693 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 MX1P20591 662 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 ETV4P43268 484 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GPR15P49685 360 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 DSC2Q02487 901 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GBX1Q14549 363 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 SWSAP1Q6NVH7 229 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 CTU1Q7Z7A3 348 aaKnown RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 ZFPM1Q8IX07 1006 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 TP53I13Q8NBR0 393 aaPredicted RBP7.39□□□□□ -1.23
USP40-202ENST00000409945 ZNF384Q8TF68 577 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 FATE1Q969F0 183 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 DMRTA2Q96SC8 542 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 TLR9Q9NR96 1032 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 ATP8A2Q9NTI2 1148 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 GOLGA6AQ9NYA3 693 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 KCTD3Q9Y597 815 aa7.39□□□□□ -1.23
USP40-202ENST00000409945 OTOFQ9HC10 1997 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 PRAMEF4O60810 478 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 GNAT2P19087 354 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 AKAP5P24588 427 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 ADD2P35612 726 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 MRE11P49959 708 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 DYNLL1P63167 89 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms