RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TEX28O15482 410 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ZMYND10O75800 440 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 FGF19O95750 216 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 URODP06132 367 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 SLC9A1P19634 815 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 IRS1P35568 1242 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TPM4P67936 248 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ROR1Q01973 937 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 WSCD1Q658N2 575 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 HGSNATQ68CP4 663 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 OVOS1Q6IE37 1185 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 PPP1R2P3Q6NXS1 205 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ANKRD54Q6NXT1 300 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 DCP1BQ8IZD4 617 aaKnown RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 CCDC127Q96BQ5 260 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM176AQ96HP8 235 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 LRCH3Q96II8 777 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 PDLIM2Q96JY6 352 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 CDX2Q99626 313 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF518BQ9C0D4 1074 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 IMPACTQ9P2X3 320 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 INPP5FQ9Y2H2 1132 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 HUS1O60921 280 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 LSM8O95777 96 aaKnown RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 HARSP12081 509 aaKnown RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 CLCN1P35523 988 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 PPP3CCP48454 512 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 NFE2Q16621 373 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ADGRD2Q7Z7M1 963 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 THEM5Q8N1Q8 247 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 RDH13Q8NBN7 331 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 B3GALNT2Q8NCR0 500 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TWNKQ96RR1 684 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TCF25Q9BQ70 676 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 B3GNT5Q9BYG0 378 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TMLHEQ9NVH6 421 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 COG5Q9UP83 839 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 MUC22E2RYF6 1773 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 C19orf67A6NJJ6 358 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 HIDE1A8MVS5 230 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 O00370 1275 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 EPHB6O15197 1021 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TEX33O43247 280 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ADH1AP07327 375 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 C7P10643 843 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 PTPN1P18031 435 aaKnown RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 MTIF2P46199 727 aaKnown RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TRPC3Q13507 836 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF268Q14587 947 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 WDR44Q5JSH3 913 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 FAM171A1Q5VUB5 890 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 LMBRD2Q68DH5 695 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 KIAA1841Q6NSI8 718 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 METTL23Q86XA0 190 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ANKRD20A12PQ8NF67 263 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF397Q8NF99 534 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-202ENST00000394943 SLC35F5Q8WV83 523 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TNIP3Q96KP6 325 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 TAB2Q9NYJ8 693 aa7.48□□□□□ -1.21
LIMA1-202ENST00000394943 ADAM12O43184 909 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 TGM5O43548 720 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF75DP51815 510 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 TNNC1P63316 161 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 PTP4A2Q12974 167 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 BMS1Q14692 1282 aaKnown RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 FUKQ8N0W3 1084 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ZMIZ2Q8NF64 920 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 GDPD5Q8WTR4 605 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 IRGQQ8WZA9 623 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 NT5C1AQ9BXI3 368 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SLC4A5Q9BY07 1137 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 IRX2Q9BZI1 471 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 CACNG4Q9UBN1 327 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 TRIM66O15016 1216 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 GYPCP04921 128 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 HMGA1P17096 107 aaKnown RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 CHRNB2P17787 502 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SOX5P35711 763 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 GNL1P36915 607 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 NDST1P52848 882 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 BPIFB4P59827 614 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 FKBP15Q5T1M5 1219 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 KLHDC10Q6PID8 442 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF662Q6ZS27 426 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ANKRD52Q8NB46 1076 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SMRP1Q8NCR6 262 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 CCDC150Q8NCX0 1101 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SYT15Q9BQS2 421 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 DNAI2Q9GZS0 605 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SFXN1Q9H9B4 322 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 DDX43Q9NXZ2 648 aaKnown RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ZFP37Q9Y6Q3 630 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 XPO1O14980 1071 aaKnown RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SEC24AO95486 1093 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 CXCL14O95715 111 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 UNGP13051 313 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-202ENST00000394943 LMO2P25791 158 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ZBED6P86452 979 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ITIH3Q06033 890 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms