RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 INTS9Q9NV88 658 aaKnown RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 TBK1Q9UHD2 729 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 GAS2O43903 313 aaKnown RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ITGB3P05106 788 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ZNF286BP0CG31 522 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 PPIL2Q13356 520 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ZNF365Q70YC5 407 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 GSTA5Q7RTV2 222 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 NIPA2Q8N8Q9 360 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ARHGEF2Q92974 986 aaKnown RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 PDZD7Q9H5P4 517 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ZWILCHQ9H900 591 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 PPME1Q9Y570 386 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 CAPN7Q9Y6W3 813 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.11□□□□□ -0.15
CCDC3-202ENST00000378839 CD19P15391 556 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 NRLP54845 237 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 TTLL12Q14166 644 aaPredicted RBP14.11□□□□□ -0.15
CCDC3-202ENST00000378839 SLC10A6Q3KNW5 377 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ZFYVE27Q5T4F4 411 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 SH3PXD2AQ5TCZ1 1133 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 LRRC38Q5VT99 294 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 TRNP1Q6NT89 227 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 KCNV1Q6PIU1 500 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ARMCX2Q7L311 632 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 PIGWQ7Z7B1 504 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 XYLT1Q86Y38 959 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 PPP1R13LQ8WUF5 828 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 PIWIL1Q96J94 861 aaKnown RBP14.11□□□□□ -0.15
CCDC3-202ENST00000378839 SERPINB12Q96P63 405 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 TMEM120BA0PK00 339 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 LRRD1A4D1F6 860 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 HBP1O60381 514 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 FSBPO95073 299 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 TNNC2P02585 160 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ARSEP51690 589 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 MNAT1P51948 309 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ADCY1Q08828 1119 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 CPLX4Q7Z7G2 160 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 CCDC89Q8N998 374 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ANKRD36BP1Q96IX9 119 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 RBM15Q96T37 977 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ZNF518BQ9C0D4 1074 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 HOMER3Q9NSC5 361 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 NAALADL1Q9UQQ1 740 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 ZNF148Q9UQR1 794 aa14.11□□□□□ -0.15
CCDC3-202ENST00000378839 PIK3R2O00459 728 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 LGALS2P05162 132 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 DYNLT1P63172 113 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 LACTBP83111 547 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 EAPPQ56P03 285 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 CYP4F22Q6NT55 531 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 SPATS2Q86XZ4 545 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 ZCCHC9Q8N567 271 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 RBM41Q96IZ5 413 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 CCDC134Q9H6E4 229 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 RPF1Q9H9Y2 349 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 SIGLEC16A6NMB1 481 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 DNALI1O14645 258 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 ASAP2O43150 1006 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 ECM2O94769 699 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 PECAM1P16284 738 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 ARF4P18085 180 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 TMEM132AQ24JP5 1023 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 TFDP3Q5H9I0 405 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 DRICH1Q6PGQ1 229 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 RELL1Q8IUW5 271 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 LHX5Q9H2C1 402 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 METTL5Q9NRN9 209 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 TJP3O95049 919 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 KRT3P12035 628 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 PSMA2P25787 234 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 MAGEA4P43358 317 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 PSMC1P62191 440 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 CAV1Q03135 178 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 ACTN3Q08043 901 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 GPS1Q13098 491 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 PIGHQ14442 188 aaPredicted RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 SLC35B2Q8TB61 432 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 CCT6BQ92526 530 aa14.1□□□□□ -0.15
CCDC3-202ENST00000378839 WDR83Q9BRX9 315 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.1□□□□□ -0.15
CCDC3-202ENST00000378839 CILPO75339 1184 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 TCEA3O75764 348 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 MICAL2O94851 1124 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 YBX3P16989 372 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC3-202ENST00000378839 PTPN7P35236 360 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 VCPP55072 806 aaKnown RBP14.09□□□□□ -0.15
CCDC3-202ENST00000378839 TFDP1Q14186 410 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 SURF1Q15526 300 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 ANKRD22Q5VYY1 191 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 CCDC13Q8IYE1 715 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 CACNA2D3Q8IZS8 1091 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 UBA3Q8TBC4 463 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 AFG1LQ8WV93 481 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 CABS1Q96KC9 395 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 PEBP4Q96S96 227 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 C16orf70Q9BSU1 422 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 KATNBL1Q9H079 304 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 ERAP1Q9NZ08 941 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms