RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SETD1BQ9UPS6 1966 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 TRIM66O15016 1216 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 FANCGO15287 622 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ABCB7O75027 752 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ARIH2O95376 493 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RHOCP08134 193 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PPP3CCP48454 512 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ATP2C1P98194 919 aaPredicted RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 SPIDRQ14159 915 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 BMT2Q1RMZ1 405 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TOR1AIP1Q5JTV8 583 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ZNF658Q5TYW1 1059 aaPredicted RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 OVOS1Q6IE37 1185 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TMEM110Q86TL2 294 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PALB2Q86YC2 1186 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ALDH16A1Q8IZ83 802 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ABRAQ8N0Z2 381 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SLC26A7Q8TE54 656 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 FATE1Q969F0 183 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ATG4CQ96DT6 458 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MAGED4Q96JG8 741 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ALG2Q9H553 416 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SPASTQ9UBP0 616 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PSME2Q9UL46 239 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PCDHGC3Q9UN70 934 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PTPN22Q9Y2R2 807 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RAPGEF6Q8TEU7 1601 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SYCP2Q9BX26 1530 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 H3BNH8 94 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MYO1FO00160 1098 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RTCAO00442 366 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 MCF2LO15068 1137 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 KRT86O43790 486 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 VIPP01282 170 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 HADHAP40939 763 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MSH2P43246 934 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CDH13P55290 713 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 HSD17B7P56937 341 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ELP6Q0PNE2 266 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PDCLQ13371 301 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 HSDL2Q6YN16 418 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 FBXO33Q7Z6M2 555 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RASGRP3Q8IV61 690 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 GSPT2Q8IYD1 628 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 FANCBQ8NB91 859 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TBCDQ9BTW9 1192 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CINPQ9BW66 212 aaPredicted RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 SPATA9Q9BWV2 254 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 OPA3Q9H6K4 179 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 UBA6A0AVT1 1052 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 IDSB3KWA1 339 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ASLP04424 464 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PABPC1P11940 636 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 JUNDP17535 347 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 HDCP19113 662 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ITGALP20701 1170 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 IDSP22304 550 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 RHBDL3P58872 404 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 TOB2Q14106 344 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 UVSSAQ2YD98 709 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MIIPQ5JXC2 388 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 EFCAB12Q6NXP0 572 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PACS1Q6VY07 963 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 HEATR4Q86WZ0 1026 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ADSSL1Q8N142 457 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PDCD7Q8N8D1 485 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 EPS8L1Q8TE68 723 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 GIPC2Q8TF65 315 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NAT6Q93015 286 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 DHX58Q96C10 678 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ZDHHC15Q96MV8 337 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 KIAA1683Q9H0B3 1180 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NKX2-4Q9H2Z4 354 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PABPC3Q9H361 631 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 ZNF576Q9H609 170 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 FBRSQ9HAH7 460 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 KRCC1Q9NPI7 259 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 ARHGEF4Q9NR80 690 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 KCNQ5Q9NR82 932 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 HACD3Q9P035 362 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 DYRK1BQ9Y463 629 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 LRRC53A6NM62 1247 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 I3L4J1 428 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PFKFB2O60825 505 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 FBXO21O94952 628 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ALPIP09923 528 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 UGT1A1P22309 533 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 GUCY1A2P33402 732 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CNR2P34972 360 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PSMC2P35998 433 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 ZNHIT3Q15649 155 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 GSTA3Q16772 222 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SETMARQ53H47 684 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 FAM26FQ5R3K3 315 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NUGGCQ68CJ6 796 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 TTC7BQ86TV6 843 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 FAM35AQ86V20 835 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CTAGE3PQ8IX95 158 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 OR6C4Q8NGE1 309 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 OR10G6Q8NH81 332 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms