RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CXorf38Q8TB03 319 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 FOXP3Q9BZS1 431 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 EFCC1Q9HA90 598 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 C3orf70A6NLC5 250 aaPredicted RBP21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 ETS1P14921 441 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 PSMA2P25787 234 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 PHKA2P46019 1235 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 ORC1Q13415 861 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 OASLQ15646 514 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 ARMCX2Q7L311 632 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 POLNQ7Z5Q5 900 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 JOSD2Q8TAC2 188 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 FAXDC2Q96IV6 333 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 C9orf72Q96LT7 481 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 RBM15Q96T37 977 aaKnown RBP eCLIP21.96■■□□□ 1.114e-6■■■□□ 14.7
CCDC88B-203ENST00000359902 A0A087WZ62 844 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 DNALI1O14645 258 aaPredicted RBP21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 ATP5DP30049 168 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 ARSEP51690 589 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 VCPP55072 806 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 LRRC34Q8IZ02 419 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 SLC4A11Q8NBS3 891 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 FDXACB1Q9BRP7 624 aaPredicted RBP21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 SMYD3Q9H7B4 428 aa21.96■■□□□ 1.11
CCDC88B-203ENST00000359902 FOXO6A8MYZ6 492 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 ITGB3P05106 788 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 MCF2P10911 925 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 MAGEA4P43358 317 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 PSMC1P62191 440 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 SLC25A11Q02978 314 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 VSTM1Q6UX27 236 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 CCDC121Q6ZUS5 278 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 KIAA0319LQ8IZA0 1049 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 SHCBP1Q8NEM2 672 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 KAT2BQ92831 832 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 NKD2Q969F2 451 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 HAUS1Q96CS2 278 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 TWNKQ96RR1 684 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 CPXM1Q96SM3 734 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 OSBPL7Q9BZF2 842 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 HMGXB4Q9UGU5 601 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 CAPN7Q9Y6W3 813 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 LGALS2P05162 132 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 CETPP11597 493 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 LAMC2Q13753 1193 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 TAPT1Q6NXT6 567 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 PIGWQ7Z7B1 504 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 CYP4X1Q8N118 509 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 LINC01465Q8N7H1 131 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 PPP1R16BQ96T49 567 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 ELOVL4Q9GZR5 314 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 PDZD7Q9H5P4 517 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 LGALS13Q9UHV8 139 aa21.95■■□□□ 1.1
CCDC88B-203ENST00000359902 TMEM120BA0PK00 339 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 LRCH4O75427 683 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 ITGAVP06756 1048 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 IL1R2P27930 398 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 IFNAR2P48551 515 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 TNFAIP2Q03169 654 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 GPS1Q13098 491 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 XYLT1Q86Y38 959 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 IFNLR1Q8IU57 520 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 FNIP1Q8TF40 1166 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 CPB2Q96IY4 423 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 CILPO75339 1184 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 ERBB2P04626 1255 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 CYP2C8P10632 490 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 GJA5P36382 358 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 PTPN11Q06124 597 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 ACTN3Q08043 901 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 STAT4Q14765 748 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 MAMDC4Q6UXC1 1216 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 CEP128Q6ZU80 1094 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 ZWILCHQ9H900 591 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 TPX2Q9ULW0 747 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 NAALADL1Q9UQQ1 740 aa21.94■■□□□ 1.1
CCDC88B-203ENST00000359902 SLC10A6Q3KNW5 377 aa21.93■■□□□ 1.1
CCDC88B-203ENST00000359902 SLC35B2Q8TB61 432 aa21.93■■□□□ 1.1
CCDC88B-203ENST00000359902 TMEM121Q9BTD3 319 aa21.93■■□□□ 1.1
CCDC88B-203ENST00000359902 ASB7Q9H672 318 aa21.93■■□□□ 1.1
CCDC88B-203ENST00000359902 EFR3BQ9Y2G0 817 aa21.93■■□□□ 1.1
CCDC88B-203ENST00000359902 MAGEB2O15479 319 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 GSCP56915 257 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 ZNF268Q14587 947 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 SMTNL2Q2TAL5 461 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 EMC1Q8N766 993 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 TMEM176AQ96HP8 235 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 CCDC77Q9BR77 488 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 VRTNQ9H8Y1 702 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 SAYSD1Q9NPB0 183 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 WDR35Q9P2L0 1181 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 AKT3Q9Y243 479 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 CDH16O75309 829 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 MICAL2O94851 1124 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 VTNP04004 478 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 KRT7P08729 469 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 ABHD2P08910 425 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 PECAM1P16284 738 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 ARF4P18085 180 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 ATICP31939 592 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms