RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MYBPHLA2RUH7 354 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 LRRIQ3A6PVS8 624 aaPredicted RBP19.7■□□□□ 0.74
CLN3-202ENST00000355477 CYP2F1P24903 491 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 GABRR2P28476 465 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 NUBP1P53384 320 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 MYL6P60660 151 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 DLG4P78352 724 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 CLDN10P78369 228 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 GRM2Q14416 872 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 NFE2Q16621 373 aaPredicted RBP19.7■□□□□ 0.74
CLN3-202ENST00000355477 SLC44A4Q53GD3 710 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 FAM171BQ6P995 826 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 VITQ6UXI7 678 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 STKLD1Q8NE28 680 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 CCDC47Q96A33 483 aaKnown RBP19.7■□□□□ 0.74
CLN3-202ENST00000355477 MMS19Q96T76 1030 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 MRPL45Q9BRJ2 306 aaKnown RBP19.7■□□□□ 0.74
CLN3-202ENST00000355477 XYLT2Q9H1B5 865 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 ATXN3LQ9H3M9 355 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 SLITRK6Q9H5Y7 841 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 IL21Q9HBE4 155 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 TRAF3IP3Q9Y228 551 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 NME7Q9Y5B8 376 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 COL4A2P08572 1712 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 VPS13AQ96RL7 3174 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 ZFHX2Q9C0A1 2572 aaPredicted RBP19.7■□□□□ 0.74
CLN3-202ENST00000355477 PDGFRBP09619 1106 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 HMGA1P17096 107 aaKnown RBP19.69■□□□□ 0.74
CLN3-202ENST00000355477 WARSP23381 471 aaKnown RBP19.69■□□□□ 0.74
CLN3-202ENST00000355477 PCSK1P29120 753 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 STARD6P59095 220 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 PNOCQ13519 176 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 KCNB1Q14721 858 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 VEPH1Q14D04 833 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 DDR2Q16832 855 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 WDR72Q3MJ13 1102 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 SDHAF4Q5VUM1 108 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 TDRD10Q5VZ19 366 aaKnown RBP19.69■□□□□ 0.74
CLN3-202ENST00000355477 PHLDB3Q6NSJ2 640 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 ENGASEQ8NFI3 743 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 RSPRY1Q96DX4 576 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 PHOX2BQ99453 314 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 GPR88Q9GZN0 384 aa19.69■□□□□ 0.74
CLN3-202ENST00000355477 KIF26AQ9ULI4 1882 aaPredicted RBP19.69■□□□□ 0.74
CLN3-202ENST00000355477 USP34Q70CQ2 3546 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 H0Y858 1186 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 C4BPAP04003 597 aaKnown RBP19.68■□□□□ 0.74
CLN3-202ENST00000355477 PSMC1P62191 440 aaKnown RBP19.68■□□□□ 0.74
CLN3-202ENST00000355477 PFKPQ01813 784 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 TRPC3Q13507 836 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 MLF2Q15773 248 aaPredicted RBP19.68■□□□□ 0.74
CLN3-202ENST00000355477 GPR158Q5T848 1215 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 TMEM150AQ86TG1 271 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 ELMO3Q96BJ8 720 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 SYT15Q9BQS2 421 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 FOXQ1Q9C009 403 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 ABCB6Q9NP58 842 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 CRTAC1Q9NQ79 661 aa19.68■□□□□ 0.74
CLN3-202ENST00000355477 GOLGA6L4A6NEF3 574 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 HEPACAM2A8MVW5 462 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 CALUO43852 315 aaPredicted RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 PHACTR2O75167 634 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 VNN1O95497 513 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 FGF19O95750 216 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 STAU1O95793 577 aaKnown RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 DCNP07585 359 aaKnown RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 PSMC3P17980 439 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 CD72P21854 359 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 RFX1P22670 979 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 GNL1P36915 607 aaPredicted RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 CYP4F8P98187 520 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 TAF12Q16514 161 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 C1orf220Q5T0J3 134 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 CEP135Q66GS9 1140 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 ARID3BQ8IVW6 561 aaPredicted RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 SMYD4Q8IYR2 804 aaPredicted RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 GUF1Q8N442 669 aaKnown RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 DTWD2Q8NBA8 298 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 SHDQ96IW2 340 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 DDX23Q9BUQ8 820 aaKnown RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 TRMT61BQ9BVS5 477 aaKnown RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 FAM86C1Q9NVL1 165 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 NXF1Q9UBU9 619 aaKnown RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 CDH9Q9ULB4 789 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 SIT1Q9Y3P8 196 aa19.67■□□□□ 0.74
CLN3-202ENST00000355477 MTF2Q9Y483 593 aaPredicted RBP19.67■□□□□ 0.74
CLN3-202ENST00000355477 LRRN2O75325 713 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 TACC1O75410 805 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 KIF20AO95235 890 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 F11P03951 625 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 GDI1P31150 447 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 HOXD11P31277 338 aaPredicted RBP19.66■□□□□ 0.74
CLN3-202ENST00000355477 ATICP31939 592 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 AP3M2P53677 418 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 TNNC1P63316 161 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 BIRC3Q13489 604 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 CFAP221Q4G0U5 840 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 SPATA2LQ8IUW3 424 aaPredicted RBP19.66■□□□□ 0.74
CLN3-202ENST00000355477 MFSD6LQ8IWD5 586 aa19.66■□□□□ 0.74
CLN3-202ENST00000355477 CCDC105Q8IYK2 499 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms