RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TNFSF13BQ9Y275 285 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 PSMA2P25787 234 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 ARSEP51690 589 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 RAD23BP54727 409 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 DYNLT1P63172 113 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 TFDP3Q5H9I0 405 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 LRRC34Q8IZ02 419 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 CNPY4Q8N129 248 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 ARFGAP1Q8N6T3 406 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 TMEM121Q9BTD3 319 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 OSBPL7Q9BZF2 842 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 ERAP1Q9NZ08 941 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 GGA2Q9UJY4 613 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 VTNP04004 478 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 STAG3L1P0CL83 205 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 KRT3P12035 628 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 IL1R2P27930 398 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 CDKN2BP42772 138 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 SLC26A2P50443 739 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 PLCB3Q01970 1234 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 ADCY1Q08828 1119 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 PPIL2Q13356 520 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 LRRC38Q5VT99 294 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 ARMCX2Q7L311 632 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 C10orf88Q9H8K7 445 aa20.42■□□□□ 0.86
COL9A3-201ENST00000343916 TMEM120BA0PK00 339 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 ARMC9Q7Z3E5 817 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 IFNB1P01574 187 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 ZNF286BP0CG31 522 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 OSBPP22059 807 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 PSMC1P62191 440 aaKnown RBP20.41■□□□□ 0.86
COL9A3-201ENST00000343916 GPS1Q13098 491 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 VSTM1Q6UX27 236 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 CCDC121Q6ZUS5 278 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 DPH6Q7L8W6 267 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 ALLCQ8N6M5 410 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 BBOF1Q8ND07 529 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 BCO2Q9BYV7 579 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 AKT3Q9Y243 479 aa20.41■□□□□ 0.86
COL9A3-201ENST00000343916 LRCH4O75427 683 aa20.4■□□□□ 0.86
COL9A3-201ENST00000343916 LGALS2P05162 132 aa20.4■□□□□ 0.86
COL9A3-201ENST00000343916 VIMP08670 466 aaKnown RBP20.4■□□□□ 0.86
COL9A3-201ENST00000343916 ARHGAP1Q07960 439 aa20.4■□□□□ 0.86
COL9A3-201ENST00000343916 FASTKD3Q14CZ7 662 aaKnown RBP20.4■□□□□ 0.86
COL9A3-201ENST00000343916 EAPPQ56P03 285 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-201ENST00000343916 SYNCQ9H7C4 482 aa20.4■□□□□ 0.86
COL9A3-201ENST00000343916 METTL5Q9NRN9 209 aaKnown RBP20.4■□□□□ 0.86
COL9A3-201ENST00000343916 ATP2C2O75185 946 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 ERBB2P04626 1255 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 GJA5P36382 358 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 MAGEA4P43358 317 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 YWHAEP62258 255 aaKnown RBP20.39■□□□□ 0.86
COL9A3-201ENST00000343916 TAP1Q03518 808 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 NIPA2Q8N8Q9 360 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 ANKRD42Q8N9B4 389 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 SLC4A11Q8NBS3 891 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 ELOVL4Q9GZR5 314 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 MROH8Q9H579 483 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 SAYSD1Q9NPB0 183 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 KCNK9Q9NPC2 374 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 STRIP2Q9ULQ0 834 aa20.39■□□□□ 0.86
COL9A3-201ENST00000343916 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.39■□□□□ 0.86
COL9A3-201ENST00000343916 C3orf70A6NLC5 250 aaPredicted RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 DNALI1O14645 258 aaPredicted RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 IL18RAPO95256 599 aa20.39■□□□□ 0.85
COL9A3-201ENST00000343916 PECAM1P16284 738 aaPredicted RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 SLC25A11Q02978 314 aaKnown RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 LMNB2Q03252 620 aa20.39■□□□□ 0.85
COL9A3-201ENST00000343916 OASLQ15646 514 aaKnown RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 AMHR2Q16671 573 aa20.39■□□□□ 0.85
COL9A3-201ENST00000343916 CAPN12Q6ZSI9 719 aa20.39■□□□□ 0.85
COL9A3-201ENST00000343916 TAX1BP1Q86VP1 789 aa20.39■□□□□ 0.85
COL9A3-201ENST00000343916 ZCCHC9Q8N567 271 aaKnown RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 PRMT7Q9NVM4 692 aaPredicted RBP20.39■□□□□ 0.85
COL9A3-201ENST00000343916 GOLGA6L7A0A1B0GV03 622 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 SIGLEC16A6NMB1 481 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 SGK1O00141 431 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 FSBPO95073 299 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 GH1P01241 217 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 CD48P09326 243 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 PHKA2P46019 1235 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 MPP2Q14168 576 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 DRICH1Q6PGQ1 229 aaPredicted RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 FASTKD5Q7L8L6 764 aaKnown RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 CXorf38Q8TB03 319 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 DYDC1Q8WWB3 177 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 LHX5Q9H2C1 402 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 PDZD7Q9H5P4 517 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 PCSK1NQ9UHG2 260 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 NAALADL1Q9UQQ1 740 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 PIK3R2O00459 728 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 ASAP2O43150 1006 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 ARF4P18085 180 aaPredicted RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 POLR2BP30876 1174 aaKnown RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 VCPP55072 806 aaKnown RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 COPS2P61201 443 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 PTPN11Q06124 597 aaPredicted RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 XYLT1Q86Y38 959 aa20.38■□□□□ 0.85
COL9A3-201ENST00000343916 ELAC2Q9BQ52 826 aaKnown RBP20.38■□□□□ 0.85
COL9A3-201ENST00000343916 DDX56Q9NY93 547 aaKnown RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms