RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ERBB2P04626 1255 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 THP07101 528 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 PYGMP11217 842 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 CKBP12277 381 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 GPD2P43304 727 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 RAB27AP51159 221 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 AFF1P51825 1210 aaKnown RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 LILRA4P59901 499 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 PSMC1P62191 440 aaKnown RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 CLUL1Q15846 466 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 PPP1R26Q5T8A7 1209 aaPredicted RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 LCLAT1Q6UWP7 414 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 UNC93AQ86WB7 457 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 HNRNPLLQ8WVV9 542 aaKnown RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 KBTBD7Q8WVZ9 684 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 C18orf8Q96DM3 657 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 ADAM2Q99965 735 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 DDX47Q9H0S4 455 aaKnown RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 DPEP3Q9H4B8 488 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 IP6K2Q9UHH9 426 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 L1RE1Q9UN81 338 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 GIT1Q9Y2X7 761 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 TDRD15B5MCY1 1934 aaKnown RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 KBTBD13C9JR72 458 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 HUS1O60921 280 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 CAND2O75155 1236 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 ZRANB2O95218 330 aaKnown RBP eCLIP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 SSR1P43307 286 aaKnown RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 SCNN1GP51170 649 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 TAP1Q03518 808 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 DSC3Q14574 896 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 STILQ15468 1287 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 PPP1R15BQ5SWA1 713 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 SNX25Q9H3E2 840 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 ST7Q9NRC1 585 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 MIOSQ9NXC5 875 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 GOLGA6L10A0A0M3HER8 536 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 RAD51CO43502 376 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 HEXIM1O94992 359 aaKnown RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 MYCP01106 439 aaPredicted RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 PDGFRBP09619 1106 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 FGFR1P11362 822 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 MRPL10Q7Z7H8 261 aaKnown RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 XYLT1Q86Y38 959 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 GSPT2Q8IYD1 628 aaKnown RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 ADGRF2Q8IZF7 708 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 SLC43A3Q8NBI5 491 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 RUBCNQ92622 972 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 TSPYL2Q9H2G4 693 aaPredicted RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 NR2E1Q9Y466 385 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 MAN1A1P33908 653 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 GJC1P36383 396 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 GNL1P36915 607 aaPredicted RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 TAS2R40P59535 323 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 ZNF252P-AS1Q0IIN9 211 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 BEND6Q5SZJ8 279 aaPredicted RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 IPO4Q8TEX9 1081 aaKnown RBP14.15□□□□□ -0.14
HMGB1-202ENST00000339872 LPIN3Q9BQK8 851 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 TRAIPQ9BWF2 469 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 PLVAPQ9BX97 442 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 RSAD1Q9HA92 442 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 WDR35Q9P2L0 1181 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 PHF24Q9UPV7 400 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 SQORQ9Y6N5 450 aa14.15□□□□□ -0.14
HMGB1-202ENST00000339872 CEP350Q5VT06 3117 aa14.15□□□□□ -0.15
HMGB1-202ENST00000339872 A0A0U1RQF3 1178 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 ARVCFO00192 962 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 SART1O43290 800 aaKnown RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 PSTPIP1O43586 416 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 ZNF623O75123 536 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 GLI1P08151 1106 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 KRT3P12035 628 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 LMO2P25791 158 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 OGDHQ02218 1023 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 TTC30AQ86WT1 665 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 RHOT1Q8IXI2 618 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 UNC93B1Q9H1C4 597 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 METTL5Q9NRN9 209 aaKnown RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 HESX1Q9UBX0 185 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 ZSCAN5CA6NGD5 496 aaPredicted RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 CASTOR2A6NHX0 329 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 PIK3R2O00459 728 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 PFKMP08237 780 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 MYBL2P10244 700 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 IGFBP6P24592 240 aaPredicted RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 RFC1P35251 1148 aaPredicted RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 GABRB2P47870 512 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 CLCNKBP51801 687 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 GSCP56915 257 aaPredicted RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 GUCY2DQ02846 1103 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 MAP9Q49MG5 647 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 TOP6BLQ8N6T0 577 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 JOSD2Q8TAC2 188 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 DDX27Q96GQ7 796 aaKnown RBP14.14□□□□□ -0.15
HMGB1-202ENST00000339872 LCMT1Q9UIC8 334 aa14.14□□□□□ -0.15
HMGB1-202ENST00000339872 SIGLEC16A6NMB1 481 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 E5RJQ4 531 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 PODXLO00592 558 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 CYB561D2O14569 222 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms