RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.55□□□□□ -0.244e-6■■■□□ 15.1
HMGCS1-201ENST00000325110 ARHGAP28Q9P2N2 729 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 POLIQ9UNA4 740 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 ONECUT3O60422 494 aaPredicted RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 CYP1A1P04798 512 aaPredicted RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 RBP3P10745 1247 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 POLR2BP30876 1174 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 GCKP35557 465 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 EIF3EP60228 445 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 ZNF568Q3ZCX4 644 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 ANKRD22Q5VYY1 191 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 MICALL2Q8IY33 904 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 ATP11CQ8NB49 1132 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 PPP1R14CQ8TAE6 165 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 PAFAH2Q99487 392 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 CGRRF1Q99675 332 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 TEX13BQ9BXU2 312 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 CCDC134Q9H6E4 229 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 NGRNQ9NPE2 291 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 NRBP2Q9NSY0 501 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 MARCOQ9UEW3 520 aaPredicted RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 XPO7Q9UIA9 1087 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 PLA2G6O60733 806 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 DCTN3O75935 186 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 GSCP56915 257 aaPredicted RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 C1QBPQ07021 282 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 MGAT5Q09328 741 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 DUOXA2Q1HG44 320 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 NLRP9Q7RTR0 991 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 CCDC125Q86Z20 511 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 ZBTB8OSQ8IWT0 167 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 ZNF280CQ8ND82 737 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 DTX3LQ8TDB6 740 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 GRAMD1AQ96CP6 724 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 SLC13A1Q9BZW2 595 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 UNC5CO95185 931 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 CD48P09326 243 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 CCND1P24385 295 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 GDF10P55107 478 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 OGDHQ02218 1023 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 FSTL1Q12841 308 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 FAM102AQ5T9C2 384 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 JOSD2Q8TAC2 188 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 UBA3Q8TBC4 463 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 TCP10LQ8TDR4 215 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 TRAPPC12Q8WVT3 735 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 SPDL1Q96EA4 605 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 FAM111AQ96PZ2 611 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 HACL1Q9UJ83 578 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 TAF1LQ8IZX4 1826 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 LPXNO60711 386 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 RASSF2P50749 326 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 STAT5BP51692 787 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 CDH6P55285 790 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 BACE1P56817 501 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 KLF1Q13351 362 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 KRT81Q14533 505 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 MAPK6Q16659 721 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 MUM1Q2TAK8 710 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 PPP6R3Q5H9R7 873 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 OR6B2Q6IFH4 312 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 PLEKHA7Q6IQ23 1121 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 SPATA18Q8TC71 538 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 C7orf43Q8WVR3 580 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 NIF3L1Q9GZT8 377 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 AS3MTQ9HBK9 375 aa13.54□□□□□ -0.24
HMGCS1-201ENST00000325110 C2orf71A6NGG8 1288 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 M0QYV0 167 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 MMP8P22894 467 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 NR1H3Q13133 447 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 APBB1IPQ7Z5R6 666 aaPredicted RBP13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 RPAINQ86UA6 219 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 ALLCQ8N6M5 410 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 SLCO2A1Q92959 643 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 FAF2Q96CS3 445 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 HAPLN2Q9GZV7 340 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 SMG5Q9UPR3 1016 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 ENTPD5O75356 428 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 ACO1P21399 889 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 RGS7P49802 495 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 GEMIN4P57678 1058 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 SP2Q02086 613 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 TMEM132BQ14DG7 1078 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 TCEAL1Q15170 157 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 CGB2Q6NT52 195 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 DENND1BQ6P3S1 775 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 CASC4Q6P4E1 433 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 NPNTQ6UXI9 565 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 HEXIM2Q96MH2 286 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 NTPCRQ9BSD7 190 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 GPATCH2LQ9NWQ4 482 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 CHKBQ9Y259 395 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 TMEM191CA6NGB0 347 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 TBC1D12O60347 775 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 RGS20O76081 388 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 PRKCBP05771 671 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 MORF4L2Q15014 288 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 TAF5Q15542 800 aa13.53□□□□□ -0.24
HMGCS1-201ENST00000325110 ZNF667Q5HYK9 610 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms