RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SYT15Q9BQS2 421 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 ZFP14Q9HCL3 533 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 GTF3C4Q9UKN8 822 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 NME7Q9Y5B8 376 aa17.48■□□□□ 0.39
LSM1-201ENST00000311351 MYBPHLA2RUH7 354 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 STK25O00506 426 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 CYP2F1P24903 491 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 LMO2P25791 158 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 PCSK1P29120 753 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 LHX1P48742 406 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 PTPN5P54829 565 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 MYL6P60660 151 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 BIRC3Q13489 604 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 SNW1Q13573 536 aaKnown RBP17.47■□□□□ 0.39
LSM1-201ENST00000311351 KCNB1Q14721 858 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 NFE2Q16621 373 aaPredicted RBP17.47■□□□□ 0.39
LSM1-201ENST00000311351 CEP135Q66GS9 1140 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 VITQ6UXI7 678 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 SMYD4Q8IYR2 804 aaPredicted RBP17.47■□□□□ 0.39
LSM1-201ENST00000311351 RSPRY1Q96DX4 576 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 MRPL45Q9BRJ2 306 aaKnown RBP17.47■□□□□ 0.39
LSM1-201ENST00000311351 MKNK1Q9BUB5 465 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 FOXQ1Q9C009 403 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 ATXN3LQ9H3M9 355 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 IL21Q9HBE4 155 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 GREB1Q4ZG55 1949 aa17.47■□□□□ 0.39
LSM1-201ENST00000311351 GOLGA6L4A6NEF3 574 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 GALR2O43603 387 aaPredicted RBP17.46■□□□□ 0.39
LSM1-201ENST00000311351 CALUO43852 315 aaPredicted RBP17.46■□□□□ 0.39
LSM1-201ENST00000311351 PHACTR2O75167 634 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 CLSTN1O94985 981 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 WARSP23381 471 aaKnown RBP17.46■□□□□ 0.39
LSM1-201ENST00000311351 TRPC3Q13507 836 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 MLF2Q15773 248 aaPredicted RBP17.46■□□□□ 0.39
LSM1-201ENST00000311351 DDR2Q16832 855 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 WDR72Q3MJ13 1102 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 GPR158Q5T848 1215 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 DPH6Q7L8W6 267 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 GPIHBP1Q8IV16 184 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 MYLPFQ96A32 169 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 PHOX2BQ99453 314 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 PRRX2Q99811 253 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 XYLT2Q9H1B5 865 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 CRTAC1Q9NQ79 661 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 FAM86C1Q9NVL1 165 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 TRAF3IP3Q9Y228 551 aa17.46■□□□□ 0.39
LSM1-201ENST00000311351 ZNF638Q14966 1978 aaKnown RBP17.46■□□□□ 0.39
LSM1-201ENST00000311351 KIF20AO95235 890 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 VNN1O95497 513 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 PDGFRBP09619 1106 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 HMGA1P17096 107 aaKnown RBP17.45■□□□□ 0.38
LSM1-201ENST00000311351 NR2F2P24468 414 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 TNNC1P63316 161 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 CLDN10P78369 228 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 FAM160A1Q05DH4 1040 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 TAF12Q16514 161 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 SCARA5Q6ZMJ2 495 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 SPATA2LQ8IUW3 424 aaPredicted RBP17.45■□□□□ 0.38
LSM1-201ENST00000311351 GUF1Q8N442 669 aaKnown RBP17.45■□□□□ 0.38
LSM1-201ENST00000311351 ENGASEQ8NFI3 743 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 TMEM174Q8WUU8 243 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 ERCC4Q92889 916 aaPredicted RBP17.45■□□□□ 0.38
LSM1-201ENST00000311351 SMYD3Q9H7B4 428 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 TRPV4Q9HBA0 871 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 ABCB6Q9NP58 842 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 NXF1Q9UBU9 619 aaKnown RBP17.45■□□□□ 0.38
LSM1-201ENST00000311351 CDH9Q9ULB4 789 aa17.45■□□□□ 0.38
LSM1-201ENST00000311351 F5P12259 2224 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 KIF26AQ9ULI4 1882 aaPredicted RBP17.44■□□□□ 0.38
LSM1-201ENST00000311351 HEPACAM2A8MVW5 462 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 H0Y858 1186 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 LRRN2O75325 713 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 AKAP3O75969 853 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 PRAMEF12O95522 483 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 FGF19O95750 216 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 STAU1O95793 577 aaKnown RBP17.44■□□□□ 0.38
LSM1-201ENST00000311351 C4BPAP04003 597 aaKnown RBP17.44■□□□□ 0.38
LSM1-201ENST00000311351 DCNP07585 359 aaKnown RBP17.44■□□□□ 0.38
LSM1-201ENST00000311351 CDC25CP30307 473 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 RAP1GAPP47736 663 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 PFKPQ01813 784 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 NCOA4Q13772 614 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 ZNF699Q32M78 642 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 SLC44A4Q53GD3 710 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 C1orf220Q5T0J3 134 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 PHLDB3Q6NSJ2 640 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 FAM171BQ6P995 826 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 TPRG1Q6ZUI0 275 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 TMEM150AQ86TG1 271 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 CCDC105Q8IYK2 499 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 SYAP1Q96A49 352 aaPredicted RBP17.44■□□□□ 0.38
LSM1-201ENST00000311351 CCDC34Q96HJ3 373 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 GCNAQ96QF7 691 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 GPR88Q9GZN0 384 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 DPEP3Q9H4B8 488 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 BRD9Q9H8M2 597 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 HEBP1Q9NRV9 189 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 MAGED2Q9UNF1 606 aaPredicted RBP17.44■□□□□ 0.38
LSM1-201ENST00000311351 FRMD4BQ9Y2L6 1034 aa17.44■□□□□ 0.38
LSM1-201ENST00000311351 ANAPC1Q9H1A4 1944 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms