RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PWP1Q13610 501 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 IZUMO2Q6UXV1 221 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 RBBP8NLQ8NC74 664 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 AVENQ9NQS1 362 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 VEPH1Q14D04 833 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 OXER1Q8TDS5 423 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 NSUN6Q8TEA1 469 aaKnown RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 RXFP1Q9HBX9 757 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 UBA2Q9UBT2 640 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 TPST1O60507 370 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 MFN2O95140 757 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FMO5P49326 533 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FNTAP49354 379 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 C16orf62Q7Z3J2 963 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 KRT73Q86Y46 540 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 SPASTQ9UBP0 616 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 IPPQ9Y573 584 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 LRRC34Q8IZ02 419 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 SVOPQ8N4V2 548 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 KDM5CP41229 1560 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FAM25AB3EWG3 89 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FAM25CB3EWG5 89 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FAM25GB3EWG6 89 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 EEF2KO00418 725 aaKnown RBP14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FAM200BP0CF97 657 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 AKR1B1P15121 316 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 UCHL3P15374 230 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 FUT11Q495W5 492 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 MROH9Q5TGP6 573 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 ZCCHC7Q8N3Z6 543 aaKnown RBP14.41□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF333Q96JL9 665 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 PABPC3Q9H361 631 aaKnown RBP14.41□□□□□ -0.1
CSPG4-201ENST00000308508 ERAP1Q9NZ08 941 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 GABBR1Q9UBS5 961 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L15C9J2P7 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L13C9JLJ4 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L11C9JVI0 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L18D6R9N7 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L22D6RA61 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L17D6RBQ6 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L19D6RCP7 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L20D6RJB6 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L24Q0WX57 530 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 DDR2Q16832 855 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L6PQ6QN14 398 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 NLGN1Q8N2Q7 840 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 TAGLN3Q9UI15 199 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 C1orf232A0A0U1RR37 186 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 PDGFRAP16234 1089 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 PROSER3Q2NL68 480 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 SGO1Q5FBB7 561 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 SPANXN2Q5MJ10 180 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 PI16Q6UXB8 463 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 MDM1Q8TC05 714 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 PIH1D3Q9NQM4 214 aaKnown RBP14.41□□□□□ -0.1
CSPG4-201ENST00000308508 INTS13Q9NVM9 706 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 TAF4O00268 1085 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 ATP9AO75110 1047 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 GLRA3O75311 464 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 KRT6AP02538 564 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 CACNA2D1P54289 1103 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 RAD23AP54725 363 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 NFIL3Q16649 462 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 OTOAQ7RTW8 1153 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 WDR48Q8TAF3 677 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF483Q8TF39 744 aaPredicted RBP14.41□□□□□ -0.1
CSPG4-201ENST00000308508 CATSPERBQ9H7T0 1116 aa14.41□□□□□ -0.1
CSPG4-201ENST00000308508 ATP6V1G2O95670 118 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 GRIK1P39086 918 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 PDIA5Q14554 519 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 HIST2H2ACQ16777 129 aaPredicted RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 HIST2H2AA3Q6FI13 130 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 METTL16Q86W50 562 aaKnown RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 RDM1Q8NG50 284 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 FLT3P36888 993 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 CYB5R4Q7L1T6 521 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 TMEM47Q9BQJ4 181 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 SLC39A10Q9ULF5 831 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 F8VZ95 297 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 PTPN7P35236 360 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 C21orf59P57076 290 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 TTLL4Q14679 1199 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF544Q6NX49 715 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 HAUS6Q7Z4H7 955 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 HOXC10Q9NYD6 342 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 EYA4O95677 639 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 APBA3O96018 575 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 CYBBP04839 570 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 TFE3P19532 575 aaPredicted RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 MAPK1P28482 360 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 ZBTB49Q6ZSB9 765 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 KRT74Q7RTS7 529 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 FRMD8P1Q9BZ68 369 aaPredicted RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 C6orf62Q9GZU0 229 aaPredicted RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 LRCH1Q9Y2L9 728 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 NUP153P49790 1475 aaKnown RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 LOC102724428A0A0B4J2F2 783 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 MCAMP43121 646 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 SIK1P57059 783 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms