RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CYP4F22Q6NT55 531 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 CYP4X1Q8N118 509 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 CABS1Q96KC9 395 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 AKT3Q9Y243 479 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 IL18RAPO95256 599 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 KRT3P12035 628 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 IL1R2P27930 398 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 PSMC1P62191 440 aaKnown RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 SLC20A2Q08357 652 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 EAPPQ56P03 285 aaPredicted RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 TFDP3Q5H9I0 405 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 HP1BP3Q5SSJ5 553 aaPredicted RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 GKAP1Q5VSY0 366 aaPredicted RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 TAOK1Q7L7X3 1001 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 FASTKD5Q7L8L6 764 aaKnown RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 LRRC34Q8IZ02 419 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 SLC4A11Q8NBS3 891 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 RBM15Q96T37 977 aaKnown RBP eCLIP21.16■□□□□ 0.98
VPS53-201ENST00000291074 ELOVL4Q9GZR5 314 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 PDZD7Q9H5P4 517 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 C10orf88Q9H8K7 445 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 MLXIPLQ9NP71 852 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 PRMT7Q9NVM4 692 aaPredicted RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 CAPN7Q9Y6W3 813 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 CPP00450 1065 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 PHKA2P46019 1235 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 YWHAEP62258 255 aaKnown RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 TAP1Q03518 808 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 YTHDF3Q7Z739 585 aaKnown RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 ALLCQ8N6M5 410 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 NIPA2Q8N8Q9 360 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 TMEM121Q9BTD3 319 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 METTL5Q9NRN9 209 aaKnown RBP21.16■□□□□ 0.98
VPS53-201ENST00000291074 GGA2Q9UJY4 613 aa21.16■□□□□ 0.98
VPS53-201ENST00000291074 LRCH4O75427 683 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 ERBB2P04626 1255 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 SLC25A11Q02978 314 aaKnown RBP21.15■□□□□ 0.98
VPS53-201ENST00000291074 GPS1Q13098 491 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 DPH6Q7L8W6 267 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 BBOF1Q8ND07 529 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 ASAP2O43150 1006 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 TRIP11Q15643 1979 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 TAPT1Q6NXT6 567 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 VSTM1Q6UX27 236 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 CXorf38Q8TB03 319 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 AFG1LQ8WV93 481 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 OSBPL7Q9BZF2 842 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 SYNCQ9H7C4 482 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 STRIP2Q9ULQ0 834 aa21.15■□□□□ 0.98
VPS53-201ENST00000291074 TMEM120BA0PK00 339 aa21.14■□□□□ 0.98
VPS53-201ENST00000291074 C3orf70A6NLC5 250 aaPredicted RBP21.14■□□□□ 0.98
VPS53-201ENST00000291074 DNALI1O14645 258 aaPredicted RBP21.14■□□□□ 0.98
VPS53-201ENST00000291074 ARF4P18085 180 aaPredicted RBP21.14■□□□□ 0.98
VPS53-201ENST00000291074 PLCB3Q01970 1234 aa21.14■□□□□ 0.98
VPS53-201ENST00000291074 FASTKD3Q14CZ7 662 aaKnown RBP21.14■□□□□ 0.98
VPS53-201ENST00000291074 OASLQ15646 514 aaKnown RBP21.14■□□□□ 0.98
VPS53-201ENST00000291074 FBXW10Q5XX13 1052 aa21.14■□□□□ 0.98
VPS53-201ENST00000291074 ZCCHC9Q8N567 271 aaKnown RBP21.14■□□□□ 0.98
VPS53-201ENST00000291074 CITO14578 2027 aa21.14■□□□□ 0.98
VPS53-201ENST00000291074 PLXNB2O15031 1838 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 ASB14A6NK59 587 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 SIGLEC16A6NMB1 481 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 POLR2BP30876 1174 aaKnown RBP21.14■□□□□ 0.97
VPS53-201ENST00000291074 MAGEA4P43358 317 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 VCPP55072 806 aaKnown RBP21.14■□□□□ 0.97
VPS53-201ENST00000291074 PTPN11Q06124 597 aaPredicted RBP21.14■□□□□ 0.97
VPS53-201ENST00000291074 ADCY1Q08828 1119 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 SLC10A6Q3KNW5 377 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 MAMDC4Q6UXC1 1216 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 XYLT1Q86Y38 959 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 LHX5Q9H2C1 402 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 SAYSD1Q9NPB0 183 aa21.14■□□□□ 0.97
VPS53-201ENST00000291074 DDX56Q9NY93 547 aaKnown RBP21.14■□□□□ 0.97
VPS53-201ENST00000291074 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.14■□□□□ 0.97
VPS53-201ENST00000291074 MED7O43513 233 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 MICAL2O94851 1124 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 IFNB1P01574 187 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 CD48P09326 243 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 PECAM1P16284 738 aaPredicted RBP21.13■□□□□ 0.97
VPS53-201ENST00000291074 COPS2P61201 443 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 LMNB2Q03252 620 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 C9orf131Q5VYM1 1079 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 DRICH1Q6PGQ1 229 aaPredicted RBP21.13■□□□□ 0.97
VPS53-201ENST00000291074 ANKRD42Q8N9B4 389 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 PCSK1NQ9UHG2 260 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 PIK3R2O00459 728 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 VIMP08670 466 aaKnown RBP21.13■□□□□ 0.97
VPS53-201ENST00000291074 ADCYAP1R1P41586 468 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 TAF5Q15542 800 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 ZNF484Q5JVG2 852 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 CCDC121Q6ZUS5 278 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 NFKBIZQ9BYH8 718 aa21.13■□□□□ 0.97
VPS53-201ENST00000291074 M0QYV0 167 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 SGK1O00141 431 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 CILPO75339 1184 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 MCF2P10911 925 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 MPP2Q14168 576 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 CAPN12Q6ZSI9 719 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 ARMC9Q7Z3E5 817 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 LINC01465Q8N7H1 131 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms