RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 VCPKMTQ9H867 229 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 AKT1P31749 480 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 ZNF677Q86XU0 584 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 KIRREL3Q8IZU9 778 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 SNRNP27Q8WVK2 155 aaKnown RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 MKNK1Q9BUB5 465 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 PLAGL2Q9UPG8 496 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 CDY2AQ9Y6F7 541 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 CDY1Q9Y6F8 540 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 IGSF9BQ9UPX0 1349 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 C5orf58C9J3I9 102 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 SKAP2O75563 359 aaPredicted RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 FNTAP49354 379 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 NUMBP49757 651 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 PLIN5Q00G26 463 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 MRPL28Q13084 256 aaKnown RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 NBPF20Q3BBV1 942 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 PKN3Q6P5Z2 889 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 LINC00116Q8NCU8 138 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 TFB1MQ8WVM0 346 aaKnown RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 SMARCAD1Q9H4L7 1026 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 LATS2Q9NRM7 1088 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 FARP1Q9Y4F1 1045 aaPredicted RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 IQSEC2Q5JU85 1478 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 TPST1O60507 370 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 KCNK10P57789 538 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 MAP3K10Q02779 954 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 CUL2Q13617 745 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 CCDC81Q6ZN84 652 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 HORMAD1Q86X24 394 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 SEPT1Q8WYJ6 367 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 TAAR1Q96RJ0 339 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 POP1Q99575 1024 aaKnown RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 GPBP1L1Q9HC44 474 aaPredicted RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 ZNF70Q9UC06 446 aaPredicted RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 IL18RAPO95256 599 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 HIST1H2AGP0C0S8 130 aaPredicted RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 HIST1H2ADP20671 130 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 DEPDC1Q5TB30 811 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 KCNV1Q6PIU1 500 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 HIST1H2AHQ96KK5 128 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 HIST1H2AJQ99878 128 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 H2AFJQ9BTM1 129 aa13.93□□□□□ -0.18
NEK4-201ENST00000233027 MAP3K20Q9NYL2 800 aaKnown RBP13.93□□□□□ -0.18
NEK4-201ENST00000233027 USP31Q70CQ4 1352 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 ASMTLO95671 621 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 ZCCHC18P0CG32 403 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 MRPS35P82673 323 aaKnown RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 SF3B3Q15393 1217 aaKnown RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 CCDC92Q53HC0 331 aaPredicted RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 AARS2Q5JTZ9 985 aaKnown RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 MEI1Q5TIA1 1274 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 DDX53Q86TM3 631 aaKnown RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 MICALL2Q8IY33 904 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 KRT35Q92764 455 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 CARD9Q9H257 536 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 NCAM1P13591 858 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 S100A5P33763 92 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 PTGER2P43116 358 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 NME5P56597 212 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 STRIP1Q5VSL9 837 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 DTNBP1Q96EV8 351 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 SEPT5Q99719 369 aaPredicted RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 LACRTQ9GZZ8 138 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 RHBDL2Q9NX52 303 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 PSTPIP1O43586 416 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 NPTXRO95502 500 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 HPDLQ96IR7 371 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 TEX13BQ9BXU2 312 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 SETBP1Q9Y6X0 1596 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 P4HA2O15460 535 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 OCM2P0CE71 109 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 OCMP0CE72 109 aaPredicted RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 PTPN7P35236 360 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 PDIA6Q15084 440 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 PAPD7Q5XG87 772 aaKnown RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 PRR5LQ6MZQ0 368 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 DTNAQ9Y4J8 743 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 AFF2P51816 1311 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 KDM6AO15550 1401 aaPredicted RBP13.92□□□□□ -0.18
NEK4-201ENST00000233027 NCOA3Q9Y6Q9 1424 aa13.92□□□□□ -0.18
NEK4-201ENST00000233027 ARIH2O95376 493 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 CSE1LP55060 971 aaKnown RBP13.91□□□□□ -0.18
NEK4-201ENST00000233027 RAD51Q06609 339 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 GFM2Q969S9 779 aaKnown RBP13.91□□□□□ -0.18
NEK4-201ENST00000233027 CDC42EP4Q9H3Q1 356 aaKnown RBP13.91□□□□□ -0.18
NEK4-201ENST00000233027 ADGRB3O60242 1522 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 DYNC1LI2O43237 492 aaPredicted RBP13.91□□□□□ -0.18
NEK4-201ENST00000233027 NTSR2O95665 410 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 RFC5P40937 340 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 RAP1GAPP47736 663 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 LRRC8BQ6P9F7 803 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 ATP8B4Q8TF62 1192 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 ZNF556Q9HAH1 456 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 NSMCE4AQ9NXX6 385 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 RNF181Q9P0P0 153 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 HPSEQ9Y251 543 aa13.91□□□□□ -0.18
NEK4-201ENST00000233027 FAM32AQ9Y421 112 aaKnown RBP13.91□□□□□ -0.18
NEK4-201ENST00000233027 TADA2AO75478 443 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms