RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Vmn2r43Q80Z08 845 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 AgpsQ8C0I1 645 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Tmem145Q8C4U2 746 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Tada2aQ8CHV6 443 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Stau2Q8CJ67 570 aaKnown RBP12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Lonrf1D3YY23 762 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Rgs2O08849 211 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Kif1cO35071 1100 aaKnown RBP12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Mageb5Q14AN0 366 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Gsdmc2Q2KHK6 480 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Usp39Q3TIX9 564 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Tigd5Q499M4 642 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Clca2Q8BG22 942 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Rps7P62082 194 aaKnown RBP12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Nfe2Q07279 373 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 FAM120AQ6A0A9 1112 aaKnown RBP12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Mapre2Q8R001 326 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Haus8Q99L00 373 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Nme5Q99MH5 211 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Mrfap1Q9CQL7 125 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Grin2dQ03391 1323 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Knl1Q66JQ7 1612 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Ttll9A2APC3 461 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Herc3A6H6S0 1050 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 CamkvQ3UHL1 512 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Spdye4aQ5IBH6 268 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Q6DFW0 481 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 SnphQ80U23 495 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Wnk4Q80UE6 1222 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 BC048507Q80ZS7 89 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Snx9Q91VH2 595 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Lrrc17Q9CXD9 443 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Mrps15Q9DC71 258 aaKnown RBP12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Tlr9Q9EQU3 1032 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Gm4312K9J7E2 289 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Far2Q7TNT2 515 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 MkksQ9JI70 570 aa12.4□□□□□ -0.42
Trim56-201ENSMUST00000054384 Mup6A2AV72 179 aa12.4□□□□□ -0.43
Trim56-201ENSMUST00000054384 Zhx3Q8C0Q2 951 aa12.4□□□□□ -0.43
Trim56-201ENSMUST00000054384 PdxkQ8K183 312 aa12.4□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dcaf6Q9DC22 876 aa12.4□□□□□ -0.43
Trim56-201ENSMUST00000054384 Gm8113E0CXS8 587 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Mapk1P63085 358 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 TbcelQ8C5W3 424 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 CopaQ8CIE6 1224 aaKnown RBP12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Atpaf2Q91YY4 289 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Pik3cgQ9JHG7 1102 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rbck1Q9WUB0 508 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Atp7bQ64446 1462 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Zfp804bA0A0G2JGH6 1343 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Lcn6A2AJB9 181 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 ClockO08785 855 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Mt-CybP00158 381 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Zfp512bQ6PHP4 879 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 E2f7Q6S7F2 904 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Olfr832Q7TRG9 312 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Nim1kQ8BHI9 436 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Nox1Q8CIZ9 591 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dync1li1Q8R1Q8 523 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Aipl1Q924K1 328 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Q9D9D9 101 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rpf2Q9JJ80 306 aaKnown RBP12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r38G3UYA8 861 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r33K7N705 861 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r44L7N2E1 861 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 TxnP10639 105 aaKnown RBP12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Zfy2P20662 777 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Pou2f3P31362 431 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Gp1bbP56400 206 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Aldh3b1Q80VQ0 468 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Gtf2h3Q8VD76 309 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ciapin1Q8WTY4 309 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r7E9PYL5 915 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r3H3BJ88 915 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r6H3BK29 913 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 BhmtO35490 407 aaKnown RBP12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Slc2a13Q3UHK1 637 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Atg9bQ6EBV9 922 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Znf569Q80W31 679 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Trim9Q8C7M3 817 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dedd2Q8QZV0 330 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Kbtbd4Q8R179 534 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 TpbpbQ9CQC0 121 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Golga4Q91VW5 2238 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ccdc134Q8C7V8 229 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Q8K2W9 541 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Guca1bQ8VBV8 201 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 HpgdQ8VCC1 269 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rhobtb3Q9CTN4 611 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Wdsub1Q9D0I6 474 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 UmpsP13439 481 aaKnown RBP12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Exoc3l4Q6DIA2 721 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Olfr698Q7TRN4 311 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Agap1Q8BXK8 857 aaKnown RBP12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Cfap61Q8CEL2 1252 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Slc30a5Q8R4H9 761 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Trim59Q922Y2 403 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ercc4Q9QZD4 917 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Pcdh11xF6ZNL5 1338 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Kdm6bQ5NCY0 1641 aa12.39□□□□□ -0.43
Retrieved 100 of 22,080 RNA–protein pairs in 33 ms