RNA–Protein interactions for RNA: YOR339C

UBC11, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC11, Length 471 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC11	YOR339C	ATG27	P46989	271 aa		4.6	□□□□□ -1.67
UBC11	YOR339C	TOS8	P53147	276 aa		4.6	□□□□□ -1.67
UBC11	YOR339C	CAF40	P53829	373 aa		4.6	□□□□□ -1.67
UBC11	YOR339C	SME1	Q12330	94 aa	Predicted RBP	4.6	□□□□□ -1.67
UBC11	YOR339C	VMA9	Q3E7B6	73 aa		4.6	□□□□□ -1.67
UBC11	YOR339C	CYC3	P06182	269 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YHR213W	P0CI67	198 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YER190C-B	P0CX94	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YEL077W-A	P0CX95	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YGR296C-B	P0CX96	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YPL283W-B	P0CX97	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YPR204C-A	P0CX98	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YFL068W	P0CX99	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YLL066W-A	P0CY00	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	YLL067W-A	P0CY01	160 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	MRP2	P10663	115 aa	Predicted RBP	4.59	□□□□□ -1.67
UBC11	YOR339C	RIB5	P38145	238 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	IMD2	P38697	523 aa	Known RBP	4.59	□□□□□ -1.67
UBC11	YOR339C	SAS2	P40963	338 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	CAB4	P53332	305 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	PAU4	P53427	120 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	SDH7	Q04401	133 aa		4.59	□□□□□ -1.67
UBC11	YOR339C	SDO1	Q07953	250 aa	Known RBP	4.59	□□□□□ -1.67
UBC11	YOR339C	MRPL23	Q12487	163 aa	Predicted RBP	4.59	□□□□□ -1.67
UBC11	YOR339C	POP5	P28005	173 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	LDS1	P31379	325 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	ECM25	P32525	599 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	SRB6	P32570	121 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	ALK2	P32789	676 aa	Predicted RBP	4.58	□□□□□ -1.68
UBC11	YOR339C	PRY2	P36110	329 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	SFT2	P38166	215 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	LSM2	P38203	95 aa	Known RBP	4.58	□□□□□ -1.68
UBC11	YOR339C	MIC12	P38341	106 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	PET100	P38958	111 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	AGE2	P40529	298 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	RTS2	P40962	232 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	LOC1	P43586	204 aa	Predicted RBP	4.58	□□□□□ -1.68
UBC11	YOR339C	YJL027C	P47063	138 aa	Predicted RBP	4.58	□□□□□ -1.68
UBC11	YOR339C	DSK2	P48510	373 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	HST4	P53688	370 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	ATC1	Q04005	294 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	TIM18	Q08749	192 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	AYT1	Q12226	474 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	LAS17	Q12446	633 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	Q0142	Q9ZZW4	58 aa		4.58	□□□□□ -1.68
UBC11	YOR339C	RPS2	P25443	254 aa	Known RBP	4.57	□□□□□ -1.68
UBC11	YOR339C	RPS0A	P32905	252 aa	Known RBP	4.57	□□□□□ -1.68
UBC11	YOR339C	YKL102C	P34249	101 aa		4.57	□□□□□ -1.68
UBC11	YOR339C	TRS20	P38334	175 aa		4.57	□□□□□ -1.68
UBC11	YOR339C	GLE2	P40066	365 aa		4.57	□□□□□ -1.68
UBC11	YOR339C	RPA43	P46669	326 aa		4.57	□□□□□ -1.68
UBC11	YOR339C	YNR071C	P53757	342 aa		4.57	□□□□□ -1.68
UBC11	YOR339C	YGR035W-A	Q45U48	73 aa		4.57	□□□□□ -1.68
UBC11	YOR339C	PAU1	P0CE88	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU14	P0CE89	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU6	P0CE90	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU18	P0CE91	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU8	P0CE92	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU11	P0CE93	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	ACP1	P32463	125 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU13	P38725	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	YNL194C	P40169	301 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	IMP2	P46972	177 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	NCE103	P53615	221 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU10	Q03050	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	YMR253C	Q04835	414 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU20	Q08322	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PRM3	Q08931	133 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	ERV2	Q12284	196 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	PAU9	Q3E770	120 aa		4.56	□□□□□ -1.68
UBC11	YOR339C	YHR212W-A	P0CX91	67 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	HSP12	P22943	109 aa	Known RBP	4.55	□□□□□ -1.68
UBC11	YOR339C	ICS2	P38284	255 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	POR2	P40478	281 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	YPI1	P43587	155 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	OCA2	P53949	197 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	SNO1	Q03144	224 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	FIT2	Q08906	153 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	YPR013C	Q12145	317 aa		4.55	□□□□□ -1.68
UBC11	YOR339C	UTP20	P35194	2493 aa	Known RBP	4.54	□□□□□ -1.68
UBC11	YOR339C	TIR2	P33890	251 aa		4.54	□□□□□ -1.68
UBC11	YOR339C	YIL024C	P40543	189 aa		4.54	□□□□□ -1.68
UBC11	YOR339C	CAX4	P53223	239 aa		4.54	□□□□□ -1.68
UBC11	YOR339C	LOA1	Q06508	300 aa		4.54	□□□□□ -1.68
UBC11	YOR339C	LDS2	Q08218	356 aa		4.54	□□□□□ -1.68
UBC11	YOR339C	PCC1	Q3E833	88 aa		4.54	□□□□□ -1.68
UBC11	YOR339C	DDI2	P0CH63	225 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	DDI3	P0CH64	225 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	ERS1	P17261	260 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	MRPL33	P20084	86 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	RNA15	P25299	296 aa	Predicted RBP	4.53	□□□□□ -1.68
UBC11	YOR339C	HMX1	P32339	317 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	NNK1	P36003	928 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	HUA1	P40325	198 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	YIL077C	P40508	320 aa		4.53	□□□□□ -1.68
UBC11	YOR339C	TDH1	P00360	332 aa	Known RBP	4.52	□□□□□ -1.69
UBC11	YOR339C	CNB1	P25296	175 aa		4.52	□□□□□ -1.69
UBC11	YOR339C	COQ3	P27680	312 aa		4.52	□□□□□ -1.69
UBC11	YOR339C	PHD1	P36093	366 aa		4.52	□□□□□ -1.69
UBC11	YOR339C	SNF11	P38956	169 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 26.3 ms