RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TP53BP1Q12888 1972 aaPredicted RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 TCRBV7S2A1N4TA0A589 114 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 LCHNA4D1U4 455 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 F5H697 171 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TOR1BO14657 336 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 GAS7O60861 476 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 SOCS5O75159 536 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 HAUS5O94927 633 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 AGFG2O95081 481 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 LPLP06858 475 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 JMJD7P0C870 316 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 PLA2G2AP14555 144 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 RHCEP18577 417 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 AZU1P20160 251 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TCEA1P23193 301 aaKnown RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 SLC6A4P31645 630 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 CYP2C18P33260 490 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 CXCR3P49682 368 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 NDUFV1P49821 464 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 GAS1P54826 345 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 RPL36AP83881 106 aaKnown RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 ATP8B2P98198 1209 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 PIGFQ07326 219 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 PPP3CAQ08209 521 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TROAPQ12815 778 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 MTM1Q13496 603 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 KEAP1Q14145 624 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 NFATC4Q14934 902 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 CFAP100Q494V2 611 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 LCE1CQ5T751 118 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 LCE1BQ5T7P3 118 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 ZNF618Q5T7W0 954 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TMCO4Q5TGY1 634 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 DTX2Q86UW9 622 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 NR2C2APQ86WQ0 139 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 SUGP2Q8IX01 1082 aaKnown RBP eCLIP0.85□□□□□ -2.27
VPS35-212ENST00000640313 CFAP52Q8N1V2 620 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 FAM109AQ8N4B1 249 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 SLC43A3Q8NBI5 491 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 ZNF548Q8NEK5 533 aaPredicted RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 CYP2W1Q8TAV3 490 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 CHTF18Q8WVB6 975 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 FATE1Q969F0 183 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 DAZAP1Q96EP5 407 aaKnown RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 RAX2Q96IS3 184 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TINF2Q9BSI4 451 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 FSD1LQ9BXM9 530 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 ACTRT3Q9BYD9 372 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TPSD1Q9BZJ3 242 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 TINAGL1Q9GZM7 467 aaPredicted RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 GREM2Q9H772 168 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 DUSP22Q9NRW4 184 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 IGSF5Q9NSI5 407 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 RBM12Q9NTZ6 932 aaKnown RBP0.85□□□□□ -2.27
VPS35-212ENST00000640313 CDYLQ9Y232 598 aa0.85□□□□□ -2.27
VPS35-212ENST00000640313 UBE2Q2LH0YL09 131 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 KIAA0391O15091 583 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 GPR32O75388 356 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 SOAT2O75908 522 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ZNF432O94892 652 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ENDOD1O94919 500 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 TJP3O95049 919 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 RAPGEF3O95398 923 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 AMY1AP04745 511 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 UMODP07911 640 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 FGF2P09038 288 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 THBS4P35443 961 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 SLC6A9P48067 706 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 NOVP48745 357 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 KPNA1P52294 538 aaPredicted RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 PGGT1BP53609 377 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ID2Q02363 134 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ZNF268Q14587 947 aaPredicted RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 ADRM1Q16186 407 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 FSCN1Q16658 493 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 ATP2B3Q16720 1220 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 CT83Q5H943 113 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 UTP14CQ5TAP6 766 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 FCRL6Q6DN72 434 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 MTHFD1LQ6UB35 978 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 NAPRTQ6XQN6 538 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 PARS2Q7L3T8 475 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 UBE2Q1Q7Z7E8 422 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 RBM23Q86U06 439 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 CKAP2LQ8IYA6 745 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 MMP21Q8N119 569 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 NXPE1Q8N323 547 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 IQCF1Q8N6M8 205 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 NSUN7Q8NE18 718 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 IL17RDQ8NFM7 739 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 DDX55Q8NHQ9 600 aaKnown RBP eCLIP0.84□□□□□ -2.27
VPS35-212ENST00000640313 RP9Q8TA86 221 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 KLHDC4Q8TBB5 520 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 NUDCD2Q8WVJ2 157 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 FAM136AQ96C01 138 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 EAF2Q96CJ1 260 aaPredicted RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 MRRFQ96E11 262 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 RNPC3Q96LT9 517 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 KLHL32Q96NJ5 620 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 SNX18Q96RF0 628 aa0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms