RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NR2E3Q9Y5X4 410 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 ARIH2O95376 493 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 PDHA1P08559 390 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 TYRP14679 529 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 ABCG1P45844 678 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 FCRLBQ6BAA4 426 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 HASPINQ8TF76 798 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 FKBP10Q96AY3 582 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 GTPBP4Q9BZE4 634 aaKnown RBP5.44□□□□□ -1.54
CD44-239ENST00000639002 SERGEFQ9UGK8 458 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 PCDHA1Q9Y5I3 950 aa5.44□□□□□ -1.54
CD44-239ENST00000639002 URI1O94763 535 aaPredicted RBP5.43□□□□□ -1.54
CD44-239ENST00000639002 FTLP02792 175 aaPredicted RBP5.43□□□□□ -1.54
CD44-239ENST00000639002 GCLCP48506 637 aaPredicted RBP5.43□□□□□ -1.54
CD44-239ENST00000639002 ZNF134P52741 427 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 NKX6-1P78426 367 aaPredicted RBP5.43□□□□□ -1.54
CD44-239ENST00000639002 EXOSC10Q01780 885 aaKnown RBP5.43□□□□□ -1.54
CD44-239ENST00000639002 SP2Q02086 613 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 THEMIS2Q5TEJ8 643 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 CAMKK1Q8N5S9 505 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 FAM136AQ96C01 138 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 ALG8Q9BVK2 526 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 LMBRD1Q9NUN5 540 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 EHD3Q9NZN3 535 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 RAD54BQ9Y620 910 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 WNT6Q9Y6F9 365 aa5.43□□□□□ -1.54
CD44-239ENST00000639002 GCOM1H8Y6P7 765 aaPredicted RBP5.42□□□□□ -1.54
CD44-239ENST00000639002 M0QYG6 137 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 DCLK1O15075 740 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 PPM1DO15297 605 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 SOAT2O75908 522 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 DNAJB5O75953 348 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 SNUPNO95149 360 aaKnown RBP5.42□□□□□ -1.54
CD44-239ENST00000639002 TTLL1O95922 423 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 PRKCGP05129 697 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 CELA2AP08217 269 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 ZFXP17010 805 aaPredicted RBP5.42□□□□□ -1.54
CD44-239ENST00000639002 HDCP19113 662 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 DRD4P21917 467 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 TBCCQ15814 346 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 PTF1AQ7RTS3 328 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 C1QL2Q7Z5L3 287 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.42□□□□□ -1.54
CD44-239ENST00000639002 FAM46DQ8NEK8 389 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.42□□□□□ -1.54
CD44-239ENST00000639002 PNPOQ9NVS9 261 aa5.42□□□□□ -1.54
CD44-239ENST00000639002 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 ERBB2P04626 1255 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 ITGALP20701 1170 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 CD6P30203 668 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 CCT8P50990 548 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 EXOSC9Q06265 439 aaKnown RBP5.41□□□□□ -1.54
CD44-239ENST00000639002 PLS1Q14651 629 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 PGS1Q32NB8 556 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 ZNF782Q6ZMW2 699 aaPredicted RBP5.41□□□□□ -1.54
CD44-239ENST00000639002 KLHDC4Q8TBB5 520 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 REPS1Q96D71 796 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 ZNF778Q96MU6 729 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 TCF7L1Q9HCS4 588 aa5.41□□□□□ -1.54
CD44-239ENST00000639002 FEZ2Q9UHY8 353 aaPredicted RBP5.41□□□□□ -1.54
CD44-239ENST00000639002 ZNF213O14771 459 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 HNRNPCP07910 306 aaKnown RBP eCLIP5.4□□□□□ -1.54
CD44-239ENST00000639002 NHLRC4P0CG21 123 aaPredicted RBP5.4□□□□□ -1.54
CD44-239ENST00000639002 PIM1P11309 404 aaPredicted RBP5.4□□□□□ -1.54
CD44-239ENST00000639002 BMPR2Q13873 1038 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 FAM153CQ494X1 144 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 FAM160B1Q5W0V3 765 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 TMEM108Q6UXF1 575 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 MAVSQ7Z434 540 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 DTX2Q86UW9 622 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 CELF5Q8N6W0 485 aaKnown RBP5.4□□□□□ -1.54
CD44-239ENST00000639002 SEMA6DQ8NFY4 1073 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 HSPBAP1Q96EW2 488 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 GPATCH3Q96I76 525 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 SLC46A1Q96NT5 459 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 C1QTNF7Q9BXJ2 289 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 SIK2Q9H0K1 926 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 HOMER2Q9NSB8 354 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 RNF7Q9UBF6 113 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 HESX1Q9UBX0 185 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 PADI4Q9UM07 663 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 SSX2IPQ9Y2D8 614 aa5.4□□□□□ -1.54
CD44-239ENST00000639002 LUC7L2Q9Y383 392 aaKnown RBP5.4□□□□□ -1.54
CD44-239ENST00000639002 DTNBO60941 627 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 IL33O95760 270 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 LATS1O95835 1130 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 ALDH2P05091 517 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 EBLN1P0CF75 366 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 LIPAP38571 399 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 EIF2B5Q13144 721 aaKnown RBP5.39□□□□□ -1.55
CD44-239ENST00000639002 EMC10Q5UCC4 262 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 ZNF551Q7Z340 670 aaPredicted RBP5.39□□□□□ -1.55
CD44-239ENST00000639002 PLBD2Q8NHP8 589 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 DDX17Q92841 729 aaKnown RBP5.39□□□□□ -1.55
CD44-239ENST00000639002 CHMP4CQ96CF2 233 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 MVB12AQ96EY5 273 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 FAM167AQ96KS9 214 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 ARHGEF3Q9NR81 526 aa5.39□□□□□ -1.55
CD44-239ENST00000639002 WDR91A4D1P6 747 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 LINC01548A6NM66 108 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms