RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RPL17P18621 184 aaKnown RBP21.07■□□□□ 0.96
UPF3A-211ENST00000618700 NDUFV1P49821 464 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 KLK7P49862 253 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 UBASH3AP57075 661 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 ADGRD2Q7Z7M1 963 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 PPM1KQ8N3J5 372 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 KAT5Q92993 513 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 KREMEN1Q96MU8 473 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 KLHL5Q96PQ7 755 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 GAS2L1Q99501 681 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-211ENST00000618700 LSM14BQ9BX40 385 aaKnown RBP21.07■□□□□ 0.96
UPF3A-211ENST00000618700 EMILIN2Q9BXX0 1053 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 NSUN3Q9H649 340 aaKnown RBP21.07■□□□□ 0.96
UPF3A-211ENST00000618700 DDX43Q9NXZ2 648 aaKnown RBP21.07■□□□□ 0.96
UPF3A-211ENST00000618700 IFNKQ9P0W0 207 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 A0A1W2PQC6 194 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 HCRTO43612 131 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 CA8P35219 290 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 KLHDC7AQ5VTJ3 777 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 GJB7Q6PEY0 223 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 SARM1Q6SZW1 724 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 THEM5Q8N1Q8 247 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 MYLIPQ8WY64 445 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 ACBD6Q9BR61 282 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 GANQ9H2C0 597 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 SNX25Q9H3E2 840 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 CISHQ9NSE2 258 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 CDY1Q9Y6F8 540 aa21.06■□□□□ 0.96
UPF3A-211ENST00000618700 PRRC2BQ5JSZ5 2229 aaKnown RBP21.06■□□□□ 0.96
UPF3A-211ENST00000618700 CILPO75339 1184 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 ADH1AP07327 375 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 ACO1P21399 889 aaKnown RBP21.05■□□□□ 0.96
UPF3A-211ENST00000618700 RFX1P22670 979 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 LMO2P25791 158 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 PCSK1P29120 753 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 GNL1P36915 607 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-211ENST00000618700 PBX1P40424 430 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 RRAGAQ7L523 313 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 ENOSF1Q7L5Y1 443 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 UNC93AQ86WB7 457 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 TTC39CQ8N584 583 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 OR6B3Q8NGW1 331 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 WHAMMQ8TF30 809 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 JAKMIP2Q96AA8 810 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 FAM81BQ96LP2 452 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 TMEM209Q96SK2 561 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 PKMYT1Q99640 499 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 ZCWPW1Q9H0M4 648 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 OCEL1Q9H607 264 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 UBE2TQ9NPD8 197 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-211ENST00000618700 HMGXB4Q9UGU5 601 aa21.05■□□□□ 0.96
UPF3A-211ENST00000618700 AJAP1Q9UKB5 411 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-211ENST00000618700 BARX2Q9UMQ3 279 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-211ENST00000618700 AP5Z1O43299 807 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 NOL4O94818 638 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 CD58P19256 250 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 ACAT1P24752 427 aaKnown RBP21.04■□□□□ 0.96
UPF3A-211ENST00000618700 OR1D2P34982 312 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 NDST1P52848 882 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 ROR1Q01973 937 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 RAB33AQ14088 237 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 DUSP6Q16828 381 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 TCEAL5Q5H9L2 206 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 INTS6LQ5JSJ4 861 aaKnown RBP21.04■□□□□ 0.96
UPF3A-211ENST00000618700 CDCA3Q99618 268 aaPredicted RBP21.04■□□□□ 0.96
UPF3A-211ENST00000618700 NAA15Q9BXJ9 866 aaKnown RBP21.04■□□□□ 0.96
UPF3A-211ENST00000618700 XPO4Q9C0E2 1151 aaKnown RBP21.04■□□□□ 0.96
UPF3A-211ENST00000618700 CDH9Q9ULB4 789 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 DAAM1Q9Y4D1 1078 aa21.04■□□□□ 0.96
UPF3A-211ENST00000618700 A8MXQ7 604 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 EPHB6O15197 1021 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 CLASP2O75122 1294 aaKnown RBP21.03■□□□□ 0.96
UPF3A-211ENST00000618700 UCHL3P15374 230 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 IGFBP4P22692 258 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 YWHAEP62258 255 aaKnown RBP21.03■□□□□ 0.96
UPF3A-211ENST00000618700 SMYD5Q6GMV2 418 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 IQCEQ6IPM2 695 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 PPP2R3CQ969Q6 453 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 TWNKQ96RR1 684 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 SYT15Q9BQS2 421 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 DPEP3Q9H4B8 488 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 FAM207AQ9NSI2 230 aaPredicted RBP21.03■□□□□ 0.96
UPF3A-211ENST00000618700 FHOD1Q9Y613 1164 aa21.03■□□□□ 0.96
UPF3A-211ENST00000618700 REV3LO60673 3130 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 WDR27A2RRH5 827 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 CBFA2T2O43439 604 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 C1RP00736 705 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 PDGFRBP09619 1106 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 OR4Q2P0C623 313 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 NRIP1P48552 1158 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 CLCN4P51793 760 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 MFAP3P55082 362 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 TSPY1Q01534 308 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 HYAL1Q12794 435 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 GPR17Q13304 367 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 PTPN21Q16825 1174 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 UVSSAQ2YD98 709 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 LILRA6Q6PI73 481 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 RBM23Q86U06 439 aaKnown RBP21.02■□□□□ 0.96
UPF3A-211ENST00000618700 LRRTM3Q86VH5 581 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms