RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CRISPLD1Q9H336 500 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 DMAC2Q9NW81 257 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 DNMT3BQ9UBC3 853 aaKnown RBP17.18■□□□□ 0.34
BRCA1-228ENST00000618469 HOOK1Q9UJC3 728 aaKnown RBP17.18■□□□□ 0.34
BRCA1-228ENST00000618469 MAFFQ9ULX9 164 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 NOTCH4Q99466 2003 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 GADD45BO75293 160 aaPredicted RBP17.17■□□□□ 0.34
BRCA1-228ENST00000618469 CLSTN1O94985 981 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 SMC2O95347 1197 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 LMNAP02545 664 aaKnown RBP17.17■□□□□ 0.34
BRCA1-228ENST00000618469 RHOP08100 348 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 KCNA4P22459 653 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 NR2F2P24468 414 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 CDR1P51861 262 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 DUSP4Q13115 394 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 ADGRF2Q8IZF7 708 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 TMEM86AQ8N2M4 240 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 ELMOD1Q8N336 334 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 TTC9BQ8N6N2 239 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 ATAD1Q8NBU5 361 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 PLEKHO2Q8TD55 490 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 ING5Q8WYH8 240 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 SMARCE1Q969G3 411 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 TIGD1Q96MW7 591 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 CORO1BQ9BR76 489 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 GDAP2Q9NXN4 497 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.17■□□□□ 0.347e-7■□□□□ 9.9
BRCA1-228ENST00000618469 EPS15L1Q9UBC2 864 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 DUSP12Q9UNI6 340 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 TRAF3IP3Q9Y228 551 aa17.17■□□□□ 0.34
BRCA1-228ENST00000618469 KRBA1A5PL33 1030 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 LRRIQ3A6PVS8 624 aaPredicted RBP17.16■□□□□ 0.34
BRCA1-228ENST00000618469 RFX1P22670 979 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 TSPY1Q01534 308 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 PLD1Q13393 1074 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 BIRC3Q13489 604 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 SLC5A9Q2M3M2 681 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 CENPPQ6IPU0 288 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 TOP6BLQ8N6T0 577 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 ITFG1Q8TB96 612 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 TMEM174Q8WUU8 243 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 GSDMAQ96QA5 445 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 SEPT5Q99719 369 aaPredicted RBP17.16■□□□□ 0.34
BRCA1-228ENST00000618469 DDX43Q9NXZ2 648 aaKnown RBP17.16■□□□□ 0.34
BRCA1-228ENST00000618469 CDH7Q9ULB5 785 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 FRMD4BQ9Y2L6 1034 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 SLC27A5Q9Y2P5 690 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 MRPS23Q9Y3D9 190 aaKnown RBP17.16■□□□□ 0.34
BRCA1-228ENST00000618469 ZNF292O60281 2723 aa17.16■□□□□ 0.34
BRCA1-228ENST00000618469 DNAH14Q0VDD8 3507 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 PHACTR2O75167 634 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 SOAT2O75908 522 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 DCNP07585 359 aaKnown RBP17.15■□□□□ 0.34
BRCA1-228ENST00000618469 LAMP2P13473 410 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 PTPN2P17706 415 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 ACAT1P24752 427 aaKnown RBP17.15■□□□□ 0.34
BRCA1-228ENST00000618469 MYL7Q01449 175 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 TRPC3Q13507 836 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 NFIL3Q16649 462 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 MGAT5BQ3V5L5 792 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 ZNF658Q5TYW1 1059 aaPredicted RBP17.15■□□□□ 0.34
BRCA1-228ENST00000618469 IQCEQ6IPM2 695 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 OSTM1Q86WC4 334 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 NPAS3Q8IXF0 933 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 DCP1BQ8IZD4 617 aaKnown RBP17.15■□□□□ 0.34
BRCA1-228ENST00000618469 PARD3BQ8TEW8 1205 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 ZNF516Q92618 1163 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 FGF13Q92913 245 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 ABI2Q9NYB9 513 aaPredicted RBP17.15■□□□□ 0.34
BRCA1-228ENST00000618469 CEP72Q9P209 647 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 PCDHA5Q9Y5H7 936 aa17.15■□□□□ 0.34
BRCA1-228ENST00000618469 HCRTO43612 131 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 CEBPBP17676 345 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 ALDH1A3P47895 512 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 TNNC1P63316 161 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 DLG4P78352 724 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 SOWAHAQ2M3V2 549 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 ZCWPW2Q504Y3 356 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 INTS6LQ5JSJ4 861 aaKnown RBP17.14■□□□□ 0.33
BRCA1-228ENST00000618469 TDRD10Q5VZ19 366 aaKnown RBP17.14■□□□□ 0.33
BRCA1-228ENST00000618469 PDZD4Q76G19 769 aaPredicted RBP17.14■□□□□ 0.33
BRCA1-228ENST00000618469 HS6ST3Q8IZP7 471 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 SPATA18Q8TC71 538 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 ZNF512Q96ME7 567 aaPredicted RBP17.14■□□□□ 0.33
BRCA1-228ENST00000618469 CNTNAP3BQ96NU0 1288 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 MMS19Q96T76 1030 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 CNTNAP3Q9BZ76 1288 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 ASAH2Q9NR71 780 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 IGSF9Q9P2J2 1179 aa17.14■□□□□ 0.33
BRCA1-228ENST00000618469 ZFP37Q9Y6Q3 630 aaPredicted RBP17.14■□□□□ 0.33
BRCA1-228ENST00000618469 FRYLO94915 3013 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 CACNA1BQ00975 2339 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 AKAP3O75969 853 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 CST3P01034 146 aaPredicted RBP17.13■□□□□ 0.33
BRCA1-228ENST00000618469 MYL4P12829 197 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 RPL13P26373 211 aaKnown RBP17.13■□□□□ 0.33
BRCA1-228ENST00000618469 PRCPP42785 496 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 AP3M2P53677 418 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 EPHB3P54753 998 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 MYL6P60660 151 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms