RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PHF13Q86YI8 300 aaPredicted RBP15.17■□□□□ 0.02
USP39-220ENST00000613444 COLGALT2Q8IYK4 626 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 ADGRF2Q8IZF7 708 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 MCOLN2Q8IZK6 566 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 C12orf29Q8N999 325 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 TRIM58Q8NG06 486 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 OR6B3Q8NGW1 331 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 SLC35G2Q8TBE7 412 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 UROC1Q96N76 676 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 CASD1Q96PB1 797 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 LHX5Q9H2C1 402 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 DPEP3Q9H4B8 488 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 KIAA1257Q9ULG3 409 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.17■□□□□ 0.02
USP39-220ENST00000613444 STXBP5LQ9Y2K9 1186 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 GRID2IPA4D2P6 1211 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 F8W810 466 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 CYP1A2P05177 515 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 ITGB1P05556 798 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 GNL1P36915 607 aaPredicted RBP15.16■□□□□ 0.02
USP39-220ENST00000613444 GATMP50440 423 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 CNGA2Q16280 664 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 WSCD1Q658N2 575 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 CNKSR3Q6P9H4 555 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 ACOT1Q86TX2 421 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 CRYBG2Q8N1P7 616 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 LRRC57Q8N9N7 239 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 TPCN2Q8NHX9 752 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 HEXIM2Q96MH2 286 aaKnown RBP15.16■□□□□ 0.02
USP39-220ENST00000613444 PDCL3Q9H2J4 239 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 KANSL3Q9P2N6 904 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 CYTH4Q9UIA0 394 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 GTF3C4Q9UKN8 822 aa15.16■□□□□ 0.02
USP39-220ENST00000613444 ATMINO43313 823 aaPredicted RBP15.15■□□□□ 0.02
USP39-220ENST00000613444 MED7O43513 233 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 B3GAT3O94766 335 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 NSFP46459 744 aaKnown RBP15.15■□□□□ 0.02
USP39-220ENST00000613444 HADHBP55084 474 aaKnown RBP15.15■□□□□ 0.02
USP39-220ENST00000613444 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP39-220ENST00000613444 C1orf131Q8NDD1 294 aaKnown RBP15.15■□□□□ 0.02
USP39-220ENST00000613444 URGCPQ8TCY9 931 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 ZNF518BQ9C0D4 1074 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 PCDH10Q9P2E7 1040 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 CHORDC1Q9UHD1 332 aaPredicted RBP15.15■□□□□ 0.02
USP39-220ENST00000613444 VWA8A3KMH1 1905 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 PTPRSQ13332 1948 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 A8MXQ7 604 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 PALMO75781 387 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 MTA2O94776 668 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 MICAL2O94851 1124 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 MMP8P22894 467 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 C2CD6Q53TS8 623 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 SGO2Q562F6 1265 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 DCLRE1AQ6PJP8 1040 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 LCLAT1Q6UWP7 414 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 TMEM35BQ8NCS4 154 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 NAPGQ99747 312 aaPredicted RBP15.15■□□□□ 0.02
USP39-220ENST00000613444 LPIN3Q9BQK8 851 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 DNAJB4Q9UDY4 337 aa15.15■□□□□ 0.02
USP39-220ENST00000613444 CTAGE9A4FU28 777 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 M0QZQ0 153 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 KIF4AO95239 1232 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 ATP1A1P05023 1023 aaKnown RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 PDGFRBP09619 1106 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 BRCC3P46736 316 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 AMPD2Q01433 879 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 PAN2Q504Q3 1202 aaKnown RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 PKDCCQ504Y2 493 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 PPP1R26Q5T8A7 1209 aaPredicted RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 SLFN11Q7Z7L1 901 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 NPAS4Q8IUM7 802 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 RHOT2Q8IXI1 618 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 ZNF653Q96CK0 615 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 VCPIP1Q96JH7 1222 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 SNX25Q9H3E2 840 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 L2HGDHQ9H9P8 463 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 AVENQ9NQS1 362 aaPredicted RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 TMEM189-UBE2V1I3L0A0 370 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 I3L4J1 428 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 ENC1O14682 589 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 PFKMP08237 780 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 CSF2RAP15509 400 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 RRM1P23921 792 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 GPD2P43304 727 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 NOP2P46087 812 aaKnown RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 NAP1L1P55209 391 aaKnown RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 C1QBPQ07021 282 aaKnown RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 IKBKEQ14164 716 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 KIAA0319Q5VV43 1072 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 ARHGAP17Q68EM7 881 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 MFSD5Q6N075 450 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 LLGL2Q6P1M3 1020 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 MMS22LQ6ZRQ5 1243 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 TMEM86AQ8N2M4 240 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 HASPINQ8TF76 798 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 ALS2CR12Q96Q35 445 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 C11orf70Q9BRQ4 267 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 NRDE2Q9H7Z3 1164 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 PRDM5Q9NQX1 630 aaPredicted RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 ADAM22Q9P0K1 906 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms