RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 DNMT3BQ9UBC3 853 aaKnown RBP9.45□□□□□ -0.9
TRIM28-214ENST00000600840 MTRRQ9UBK8 725 aa9.45□□□□□ -0.9
TRIM28-214ENST00000600840 SIT1Q9Y3P8 196 aa9.45□□□□□ -0.9
TRIM28-214ENST00000600840 CDY1Q9Y6F8 540 aa9.45□□□□□ -0.9
TRIM28-214ENST00000600840 ANK1P16157 1881 aa9.45□□□□□ -0.9
TRIM28-214ENST00000600840 BICDL2A1A5D9 508 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 ZNF233A6NK53 670 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 ANHXE9PGG2 379 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CETN3O15182 167 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 SLC16A3O15427 465 aaKnown RBP9.44□□□□□ -0.9
TRIM28-214ENST00000600840 TBC1D4O60343 1298 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CXCL8P10145 99 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 FSHRP23945 695 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 RPL13P26373 211 aaKnown RBP9.44□□□□□ -0.9
TRIM28-214ENST00000600840 ZNF165P49910 485 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CYP2J2P51589 502 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 DLG4P78352 724 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 SPAG1Q07617 926 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CYP24A1Q07973 514 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 HTR4Q13639 388 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 PSMD6Q15008 389 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 SNRNP35Q16560 246 aaKnown RBP9.44□□□□□ -0.9
TRIM28-214ENST00000600840 PARM1Q6UWI2 310 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.44□□□□□ -0.9
TRIM28-214ENST00000600840 TRIM59Q8IWR1 403 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CSGALNACT2Q8N6G5 542 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 RDH13Q8NBN7 331 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 SLC7A14Q8TBB6 771 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 TMC2Q8TDI7 906 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 ACAP3Q96P50 834 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CCDC94Q9BW85 323 aaPredicted RBP9.44□□□□□ -0.9
TRIM28-214ENST00000600840 ASB7Q9H672 318 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 CBX8Q9HC52 389 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 PDE11AQ9HCR9 933 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 PARD6AQ9NPB6 346 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 ARHGEF3Q9NR81 526 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 FANCLQ9NW38 375 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 DACH1Q9UI36 760 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 NFE2L3Q9Y4A8 694 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 NUMBLQ9Y6R0 609 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 PTPRJQ12913 1337 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 GPR179Q6PRD1 2367 aa9.44□□□□□ -0.9
TRIM28-214ENST00000600840 BAHCC1Q9P281 2608 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 WDR27A2RRH5 827 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 PODXLO00592 558 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 EXOC3O60645 756 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 SEC24AO95486 1093 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 CAVIN2O95810 425 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 SRFP11831 508 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 TGM1P22735 817 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 PSMC2P35998 433 aaKnown RBP9.43□□□□□ -0.9
TRIM28-214ENST00000600840 GUCY2FP51841 1108 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 GPC5P78333 572 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 MYL5Q02045 173 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 ELAVL2Q12926 359 aaKnown RBP9.43□□□□□ -0.9
TRIM28-214ENST00000600840 MRPL58Q14197 206 aaKnown RBP9.43□□□□□ -0.9
TRIM28-214ENST00000600840 SLC5A9Q2M3M2 681 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 PPM1JQ5JR12 505 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 PPM1LQ5SGD2 360 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 CD302Q8IX05 232 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 EFCAB13Q8IY85 973 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 PJA1Q8NG27 643 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 OR5B17Q8NGF7 314 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 ING5Q8WYH8 240 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 FGF13Q92913 245 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 FAM84AQ96KN4 292 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 TSPAN18Q96SJ8 248 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 TSG101Q99816 390 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 RTKNQ9BST9 563 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 THAP9Q9H5L6 903 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 RBAKQ9NYW8 714 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-214ENST00000600840 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.43□□□□□ -0.9
TRIM28-214ENST00000600840 TUBGCP4Q9UGJ1 667 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 DPP7Q9UHL4 492 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 USP18Q9UMW8 372 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 POLIQ9UNA4 740 aa9.43□□□□□ -0.9
TRIM28-214ENST00000600840 SMG5Q9UPR3 1016 aaKnown RBP9.43□□□□□ -0.9
TRIM28-214ENST00000600840 LRRIQ3A6PVS8 624 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 PPEF2O14830 753 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 PMM2O15305 246 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 IL18RAPO95256 599 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 C4BPAP04003 597 aaKnown RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 HNRNPA1P09651 372 aaKnown RBP eCLIP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 SDHBP21912 280 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 KCNA4P22459 653 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 YARSP54577 528 aaKnown RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 ARPP19P56211 112 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 ROR1Q01973 937 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 CREMQ03060 361 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 LMNB2Q03252 620 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 PPP3CAQ08209 521 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 MIIPQ5JXC2 388 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 LIN9Q5TKA1 542 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 CEP135Q66GS9 1140 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 JADE1Q6IE81 842 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 PHLDB3Q6NSJ2 640 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 DPY19L2P1Q6NXN4 242 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 ELMSAN1Q6PJG2 1045 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 APBB1IPQ7Z5R6 666 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 FAM186BQ8IYM0 893 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms