RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ALKBH5Q6P6C2 394 aaKnown RBP16.44■□□□□ 0.22
UPF1-206ENST00000598471 THEM5Q8N1Q8 247 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 ACRBPQ8NEB7 543 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 SLC30A5Q8TAD4 765 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 LNX1Q8TBB1 728 aaPredicted RBP16.44■□□□□ 0.22
UPF1-206ENST00000598471 PHOSPHO2Q8TCD6 241 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 ZNF606Q8WXB4 792 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 DDX1Q92499 740 aaKnown RBP16.44■□□□□ 0.22
UPF1-206ENST00000598471 ZNF558Q96NG5 402 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 TWNKQ96RR1 684 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 RC3H2Q9HBD1 1191 aaKnown RBP16.44■□□□□ 0.22
UPF1-206ENST00000598471 ACP6Q9NPH0 428 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.44■□□□□ 0.22
UPF1-206ENST00000598471 HMGXB4Q9UGU5 601 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 STXBP5LQ9Y2K9 1186 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 FNDC1Q4ZHG4 1894 aaPredicted RBP16.44■□□□□ 0.22
UPF1-206ENST00000598471 ESPNB1AK53 854 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 GABRDO14764 452 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 SYN3O14994 580 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 GJB5O95377 273 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 LSM8O95777 96 aaKnown RBP16.43■□□□□ 0.22
UPF1-206ENST00000598471 BRD2P25440 801 aaKnown RBP16.43■□□□□ 0.22
UPF1-206ENST00000598471 BMP8BP34820 402 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 VAV2P52735 878 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 CYP27A1Q02318 531 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 CD300LGQ6UXG3 332 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 CCAR2Q8N163 923 aaKnown RBP16.43■□□□□ 0.22
UPF1-206ENST00000598471 CRYBG2Q8N1P7 616 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 TSGA10Q9BZW7 698 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 UBE2OQ9C0C9 1292 aaKnown RBP16.43■□□□□ 0.22
UPF1-206ENST00000598471 CWH43Q9H720 699 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 AAASQ9NRG9 546 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 KCND1Q9NSA2 647 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 DDX43Q9NXZ2 648 aaKnown RBP16.43■□□□□ 0.22
UPF1-206ENST00000598471 NAGPAQ9UK23 515 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 PCDHGC3Q9UN70 934 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 INSL6Q9Y581 213 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 PCDHA13Q9Y5I0 950 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 ATP8B3O60423 1300 aa16.43■□□□□ 0.22
UPF1-206ENST00000598471 I3L4J1 428 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 ITGB1P05556 798 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 PDGFRBP09619 1106 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 GZMAP12544 262 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 ATP2A2P16615 1042 aaKnown RBP16.42■□□□□ 0.22
UPF1-206ENST00000598471 HTRA4P83105 476 aaPredicted RBP16.42■□□□□ 0.22
UPF1-206ENST00000598471 ORC1Q13415 861 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 CNGA2Q16280 664 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 CLEC16AQ2KHT3 1053 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 OVOS1Q6IE37 1185 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 TMCO2Q7Z6W1 182 aaPredicted RBP16.42■□□□□ 0.22
UPF1-206ENST00000598471 ACOT1Q86TX2 421 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 OSTM1Q86WC4 334 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 FIBCD1Q8N539 461 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 SYT15Q9BQS2 421 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 MARCH5Q9NX47 278 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 HCSTQ9UBK5 93 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 CDH9Q9ULB4 789 aa16.42■□□□□ 0.22
UPF1-206ENST00000598471 TIMM13Q9Y5L4 95 aaPredicted RBP16.42■□□□□ 0.22
UPF1-206ENST00000598471 F8W810 466 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 ZNF263O14978 683 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 RTN2O75298 545 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 CALCAP01258 141 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 H2AFZP0C0S5 128 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 IGFBP6P24592 240 aaPredicted RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 PPM1AP35813 382 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 TSPY1Q01534 308 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 YWHAHQ04917 246 aaPredicted RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 KIF5AQ12840 1032 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 SHHQ15465 462 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 ARHGAP29Q52LW3 1261 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 C9orf50Q5SZB4 431 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 ARHGAP17Q68EM7 881 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 FUT10Q6P4F1 479 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 KCNT2Q6UVM3 1135 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 H2AFVQ71UI9 128 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 HERC6Q8IVU3 1022 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 B3GALNT2Q8NCR0 500 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 TMEM35BQ8NCS4 154 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 TFAP2BQ92481 460 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 PPP1R13BQ96KQ4 1090 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 RAD9AQ99638 391 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 ZNF518BQ9C0D4 1074 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 TRMT1Q9NXH9 659 aaKnown RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 CXXC1Q9P0U4 656 aaPredicted RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 HESX1Q9UBX0 185 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 INTUQ9ULD6 942 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 NENFQ9UMX5 172 aa16.41■□□□□ 0.22
UPF1-206ENST00000598471 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.41■□□□□ 0.22
UPF1-206ENST00000598471 REXO2Q9Y3B8 237 aaKnown RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 MRPL42Q9Y6G3 142 aaKnown RBP16.41■□□□□ 0.22
UPF1-206ENST00000598471 COL4A6Q14031 1691 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 TMCO5BA8MYB1 307 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 O00370 1275 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 KRT86O43790 486 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 PTPN1P18031 435 aaKnown RBP16.4■□□□□ 0.22
UPF1-206ENST00000598471 LMO2P25791 158 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 NSFP46459 744 aaKnown RBP16.4■□□□□ 0.22
UPF1-206ENST00000598471 MAPRE1Q15691 268 aaKnown RBP16.4■□□□□ 0.22
UPF1-206ENST00000598471 FAM171A1Q5VUB5 890 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms