RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 AGO2Q9UKV8 859 aaKnown RBP12.83□□□□□ -0.36
LIG3-209ENST00000586435 SMC3Q9UQE7 1217 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.83□□□□□ -0.36
LIG3-209ENST00000586435 ANAPC1Q9H1A4 1944 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 EML5Q05BV3 1969 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 SOBPA7XYQ1 873 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 CYB561D2O14569 222 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 PPP1R37O75864 691 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 HAPLN1P10915 354 aaPredicted RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 DDIT3P35638 169 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 CYP4F8P98187 520 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 SIM2Q14190 667 aaPredicted RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 POSTNQ15063 836 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 SF3A1Q15459 793 aaKnown RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 SV2CQ496J9 727 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 ZC2HC1CQ53FD0 456 aaPredicted RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 CRELD2Q6UXH1 353 aaPredicted RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 PRR23BQ6ZRT6 265 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 Q6ZS52 159 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 ZNF720Q7Z2F6 126 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 EFCAB13Q8IY85 973 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 KRI1Q8N9T8 703 aaKnown RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 NETO1Q8TDF5 533 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 ZFYVE19Q96K21 471 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 ZNF560Q96MR9 790 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 PYM1Q9BRP8 204 aaKnown RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 ZHX3Q9H4I2 956 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 RBM12Q9NTZ6 932 aaKnown RBP12.82□□□□□ -0.36
LIG3-209ENST00000586435 DPP3Q9NY33 737 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 SEL1LQ9UBV2 794 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 STK17AQ9UEE5 414 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 ACACBO00763 2458 aa12.82□□□□□ -0.36
LIG3-209ENST00000586435 KIAA1549LQ6ZVL6 1849 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 ATG2BQ96BY7 2078 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 KPNA7A9QM74 516 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 CHURC1-FNTBB4DL54 471 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 TISP43B9A030 160 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 HRO43593 1189 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 FOXD2O60548 495 aaPredicted RBP12.81□□□□□ -0.36
LIG3-209ENST00000586435 IL18RAPO95256 599 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 DDX6P26196 483 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIG3-209ENST00000586435 PNPLA4P41247 253 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 FNTBP49356 437 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 DMWDQ09019 674 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 SPEM2Q0P670 501 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 PON2Q15165 354 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 PTPAQ15257 358 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 LPAL2Q16609 132 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 ITPRIPL2Q3MIP1 535 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 WSCD1Q658N2 575 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 LARP1BQ659C4 914 aaKnown RBP12.81□□□□□ -0.36
LIG3-209ENST00000586435 LRRTM3Q86VH5 581 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 DCP1BQ8IZD4 617 aaKnown RBP12.81□□□□□ -0.36
LIG3-209ENST00000586435 CMTM8Q8IZV2 173 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 LEO1Q8WVC0 666 aaPredicted RBP12.81□□□□□ -0.36
LIG3-209ENST00000586435 STRA6Q9BX79 667 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 SLC46A2Q9BY10 475 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 KIF9Q9HAQ2 790 aa12.81□□□□□ -0.36
LIG3-209ENST00000586435 THG1LQ9NWX6 298 aaKnown RBP12.81□□□□□ -0.36
LIG3-209ENST00000586435 HELZP42694 1942 aaKnown RBP12.81□□□□□ -0.36
LIG3-209ENST00000586435 MYO16Q9Y6X6 1858 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 CCDC163A0A0D9SF12 145 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 SLC30A4O14863 429 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 HMGA1P17096 107 aaKnown RBP12.8□□□□□ -0.36
LIG3-209ENST00000586435 ADSSP30520 456 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 TNK2Q07912 1038 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 TAF12Q16514 161 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 CSRP2Q16527 193 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 TMEM150AQ86TG1 271 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 WDR5BQ86VZ2 330 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 SFR1Q86XK3 245 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 GPIHBP1Q8IV16 184 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 POMGNT1Q8WZA1 660 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 FAM83CQ9BQN1 747 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 SEMA4GQ9NTN9 838 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 ABI2Q9NYB9 513 aaPredicted RBP12.8□□□□□ -0.36
LIG3-209ENST00000586435 EXOC7Q9UPT5 735 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 PCDHB5Q9Y5E4 795 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.8□□□□□ -0.36
LIG3-209ENST00000586435 EPG5Q9HCE0 2579 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 CNOT1A5YKK6 2376 aaKnown RBP12.8□□□□□ -0.36
LIG3-209ENST00000586435 PTPRDP23468 1912 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 SDK1Q7Z5N4 2213 aa12.8□□□□□ -0.36
LIG3-209ENST00000586435 F11P03951 625 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 CSH1P0DML2 217 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 CSH2P0DML3 217 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 GAP43P17677 238 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 AVPR1AP37288 418 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 NLRP12P59046 1061 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 TSPY1Q01534 308 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 ZNF268Q14587 947 aaPredicted RBP12.79□□□□□ -0.36
LIG3-209ENST00000586435 NFE2Q16621 373 aaPredicted RBP12.79□□□□□ -0.36
LIG3-209ENST00000586435 TMEM196Q5HYL7 178 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 PRR23CQ6ZRP0 262 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.79□□□□□ -0.36
LIG3-209ENST00000586435 BRSK2Q8IWQ3 736 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 TTC8Q8TAM2 541 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 SPATA18Q8TC71 538 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 GIPC2Q8TF65 315 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 ABCB6Q9NP58 842 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms