RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 NUDCD1Q96RS6 583 aa18.01■□□□□ 0.47
VPS53-215ENST00000573028 ARHGAP28Q9P2N2 729 aa18.01■□□□□ 0.47
VPS53-215ENST00000573028 WEE2P0C1S8 567 aa18■□□□□ 0.47
VPS53-215ENST00000573028 NRLP54845 237 aa18■□□□□ 0.47
VPS53-215ENST00000573028 ACTR2P61160 394 aa18■□□□□ 0.47
VPS53-215ENST00000573028 ZNF252P-AS1Q0IIN9 211 aa18■□□□□ 0.47
VPS53-215ENST00000573028 EMC2Q15006 297 aa18■□□□□ 0.47
VPS53-215ENST00000573028 ANKRD22Q5VYY1 191 aa18■□□□□ 0.47
VPS53-215ENST00000573028 EP400NLQ6ZTU2 488 aa18■□□□□ 0.47
VPS53-215ENST00000573028 PHF13Q86YI8 300 aaPredicted RBP18■□□□□ 0.47
VPS53-215ENST00000573028 ZNF75CPQ92670 426 aaPredicted RBP18■□□□□ 0.47
VPS53-215ENST00000573028 C17orf75Q9HAS0 396 aa18■□□□□ 0.47
VPS53-215ENST00000573028 SLC5A4Q9NY91 659 aa18■□□□□ 0.47
VPS53-215ENST00000573028 ENTPD5O75356 428 aa18■□□□□ 0.47
VPS53-215ENST00000573028 DCTN3O75935 186 aa18■□□□□ 0.47
VPS53-215ENST00000573028 CST3P01034 146 aaPredicted RBP18■□□□□ 0.47
VPS53-215ENST00000573028 VSIG10LQ86VR7 867 aa18■□□□□ 0.47
VPS53-215ENST00000573028 FAM13CQ8NE31 585 aa18■□□□□ 0.47
VPS53-215ENST00000573028 SUPT20HQ8NEM7 779 aa18■□□□□ 0.47
VPS53-215ENST00000573028 TTC8Q8TAM2 541 aa18■□□□□ 0.47
VPS53-215ENST00000573028 PSMC3IPQ9P2W1 217 aaPredicted RBP18■□□□□ 0.47
VPS53-215ENST00000573028 ZFP69BQ9UJL9 534 aa18■□□□□ 0.47
VPS53-215ENST00000573028 SMG5Q9UPR3 1016 aaKnown RBP18■□□□□ 0.47
VPS53-215ENST00000573028 LOXHD1Q8IVV2 1947 aa18■□□□□ 0.47
VPS53-215ENST00000573028 TMEM191CA6NGB0 347 aa18■□□□□ 0.47
VPS53-215ENST00000573028 TMEM191BP0C7N4 346 aa18■□□□□ 0.47
VPS53-215ENST00000573028 CTCFP49711 727 aaPredicted RBP18■□□□□ 0.47
VPS53-215ENST00000573028 YARSP54577 528 aaKnown RBP18■□□□□ 0.47
VPS53-215ENST00000573028 VCPP55072 806 aaKnown RBP18■□□□□ 0.47
VPS53-215ENST00000573028 SLC8A3P57103 927 aa18■□□□□ 0.47
VPS53-215ENST00000573028 C1QBPQ07021 282 aaKnown RBP18■□□□□ 0.47
VPS53-215ENST00000573028 MOGSQ13724 837 aa18■□□□□ 0.47
VPS53-215ENST00000573028 SNRNP48Q6IEG0 339 aaKnown RBP18■□□□□ 0.47
VPS53-215ENST00000573028 CEP128Q6ZU80 1094 aa18■□□□□ 0.47
VPS53-215ENST00000573028 C3orf62Q6ZUJ4 267 aa18■□□□□ 0.47
VPS53-215ENST00000573028 NLRP9Q7RTR0 991 aa18■□□□□ 0.47
VPS53-215ENST00000573028 CCDC125Q86Z20 511 aa18■□□□□ 0.47
VPS53-215ENST00000573028 ASAP3Q8TDY4 903 aa18■□□□□ 0.47
VPS53-215ENST00000573028 SLC9A2Q9UBY0 812 aa18■□□□□ 0.47
VPS53-215ENST00000573028 GDF10P55107 478 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 MAPK6Q16659 721 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 GPAT2Q6NUI2 795 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 GINM1Q9NU53 330 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS53-215ENST00000573028 CD19P15391 556 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 GM2AP17900 193 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 MMP8P22894 467 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 GLRA2P23416 452 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 MORF4L2Q15014 288 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 MSS51Q4VC12 460 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 TFDP3Q5H9I0 405 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 RNASEH2BQ5TBB1 312 aaKnown RBP17.99■□□□□ 0.47
VPS53-215ENST00000573028 RELL1Q8IUW5 271 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 PALM2Q8IXS6 379 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 ACTL9Q8TC94 416 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 ZNF668Q96K58 619 aaPredicted RBP17.99■□□□□ 0.47
VPS53-215ENST00000573028 PCSK1NQ9UHG2 260 aa17.99■□□□□ 0.47
VPS53-215ENST00000573028 WNT10BO00744 389 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 PCK1P35558 622 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 SKIV2L2P42285 1042 aaKnown RBP17.98■□□□□ 0.47
VPS53-215ENST00000573028 GPX6P59796 221 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 FYB2Q5VWT5 728 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 ZNF526Q8TF50 670 aaPredicted RBP17.98■□□□□ 0.47
VPS53-215ENST00000573028 LRMDAQ9H2I8 198 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 FZD1Q9UP38 647 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 hCG_1818297A0A087WSY0 165 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 CFAP69A5D8W1 941 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 ALOX15BO15296 676 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 PRPF4O43172 522 aaKnown RBP eCLIP17.98■□□□□ 0.471e-8■■□□□ 11.6
VPS53-215ENST00000573028 STBD1O95210 358 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 PDHA1P08559 390 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 T-ENOLP0DO92 83 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 KCNA2P16389 499 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 TNFSF9P41273 254 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 OTUD4Q01804 1114 aaKnown RBP17.98■□□□□ 0.47
VPS53-215ENST00000573028 CCDC15Q0P6D6 951 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 ORC1Q13415 861 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 FNBP1LQ5T0N5 605 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 AGGF1Q8N302 714 aaeCLIP17.98■□□□□ 0.47
VPS53-215ENST00000573028 MAB21L3Q8N8X9 362 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 TCP10LQ8TDR4 215 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 RSAD2Q8WXG1 361 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 LPAR1Q92633 364 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 VCPIP1Q96JH7 1222 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 FOXP3Q9BZS1 431 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 SLC17A7Q9P2U7 560 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 TBC1D12O60347 775 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 CST8O60676 142 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 RGS20O76081 388 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 GEMIN4P57678 1058 aaKnown RBP17.98■□□□□ 0.47
VPS53-215ENST00000573028 BASP1P80723 227 aaKnown RBP17.98■□□□□ 0.47
VPS53-215ENST00000573028 ZBTB16Q05516 673 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 RFWD2Q8NHY2 731 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 C10orf82Q8WW14 230 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 PAFAH2Q99487 392 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 MTMR12Q9C0I1 747 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 TJP2Q9UDY2 1190 aa17.98■□□□□ 0.47
VPS53-215ENST00000573028 TTLL13PA6NNM8 815 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 EDN1P05305 212 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 PSMA2P25787 234 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 130.4 ms