RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PTRH1Q86Y79 214 aaKnown RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 ERO1BQ86YB8 467 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 FOXP4Q8IVH2 680 aaPredicted RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 TRIM48Q8IWZ4 208 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 CHST14Q8NCH0 376 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS53-212ENST00000572259 UHMK1Q8TAS1 419 aaKnown RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 PHOSPHO1Q8TCT1 267 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 TGFBRAP1Q8WUH2 860 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 ATRIPQ8WXE1 791 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 CRNKL1Q9BZJ0 848 aaKnown RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 PIH1D3Q9NQM4 214 aaKnown RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 HELLSQ9NRZ9 838 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 MYOTQ9UBF9 498 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 HERC5Q9UII4 1024 aaKnown RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 PALD1Q9ULE6 856 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 SLC12A8A0AV02 714 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 PTPDC1A2A3K4 754 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 PQBP1O60828 265 aaKnown RBP6.84□□□□□ -1.31
VPS53-212ENST00000572259 TADA3O75528 432 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 FKBP9O95302 570 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 ZFYP08048 801 aaPredicted RBP6.84□□□□□ -1.31
VPS53-212ENST00000572259 CETPP11597 493 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 ITGB5P18084 799 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 LBX1P52954 281 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 ROR1Q01973 937 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 PPATQ06203 517 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 WASHC5Q12768 1159 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 SNAPC2Q13487 334 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 VGLL4Q14135 290 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 TERF2Q15554 542 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 EMC4Q5J8M3 183 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 HABP4Q5JVS0 413 aaKnown RBP6.84□□□□□ -1.31
VPS53-212ENST00000572259 DGKKQ5KSL6 1271 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 AGAP9Q5VTM2 703 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 FKBP9P1Q75LS8 142 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 ZNF605Q86T29 641 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 NXPE1Q8N323 547 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 MYCT1Q8N699 235 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 NSUN6Q8TEA1 469 aaKnown RBP6.84□□□□□ -1.31
VPS53-212ENST00000572259 SH3RF3Q8TEJ3 882 aaPredicted RBP6.84□□□□□ -1.31
VPS53-212ENST00000572259 HDAC2Q92769 488 aaKnown RBP6.84□□□□□ -1.31
VPS53-212ENST00000572259 OPTNQ96CV9 577 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 CLMNQ96JQ2 1002 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 MKS1Q9NXB0 559 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 RNF186Q9NXI6 227 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 FAM53CQ9NYF3 392 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 KLHL14Q9P2G3 628 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 B4GALT6Q9UBX8 382 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 ZNF112Q9UJU3 913 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 FZD1Q9UP38 647 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 TMX2Q9Y320 296 aa6.84□□□□□ -1.31
VPS53-212ENST00000572259 DOCK2Q92608 1830 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ZNF532Q9HCE3 1301 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 MAST2Q6P0Q8 1798 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 TCRBV5S4A2TA0A5A2 114 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 PABPN1LA6NDY0 278 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 DDTLA6NHG4 134 aaPredicted RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 A6NNZ2 444 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ZNF561-AS1K7EIQ3 104 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 KCNK3O14649 394 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 AP1G1O43747 822 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 PLOD3O60568 738 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 KRT37O76014 449 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 AMY2AP04746 511 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 HSPA8P11142 646 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 AMY2BP19961 511 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 MX1P20591 662 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 OAS2P29728 719 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 LSSP48449 732 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 KRT83P78385 493 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 OCRLQ01968 901 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 PPIL2Q13356 520 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ODF1Q14990 250 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ARHGEF6Q15052 776 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 UBE3CQ15386 1083 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 SKOR2Q2VWA4 1001 aaPredicted RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 PLEKHN1Q494U1 663 aaPredicted RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 PGM2L1Q6PCE3 622 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 CYP26C1Q6V0L0 522 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 FASTKD5Q7L8L6 764 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 MAPKAPK5Q8IW41 473 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 HSCBQ8IWL3 235 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ZFPM1Q8IX07 1006 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 RBM12BQ8IXT5 1001 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 LMNTD2Q8IXW0 634 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 SCYL3Q8IZE3 742 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 OR2C3Q8N628 320 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 MIGA1Q8NAN2 632 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 EXOC6Q8TAG9 804 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ZNF384Q8TF68 577 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ZKSCAN4Q969J2 545 aaPredicted RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 LIN37Q96GY3 246 aaPredicted RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 DIRC2Q96SL1 478 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 SEC62Q99442 399 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 NUDT16L1Q9BRJ7 211 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 LSM14BQ9BX40 385 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 SLC26A6Q9BXS9 759 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ATP6V0A4Q9HBG4 840 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 SMURF1Q9HCE7 757 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms