RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZNF280DQ6N043 979 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 ELMSAN1Q6PJG2 1045 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 RIN2Q8WYP3 895 aaPredicted RBP22.08■■□□□ 1.13
VPS53-210ENST00000571456 ANP32EQ9BTT0 268 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 S1PR5Q9H228 398 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 DPP7Q9UHL4 492 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 NR2E1Q9Y466 385 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.07■■□□□ 1.12
VPS53-210ENST00000571456 CYB561D2O14569 222 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 CST3P01034 146 aaPredicted RBP22.07■■□□□ 1.12
VPS53-210ENST00000571456 AFPP02771 609 aaKnown RBP22.07■■□□□ 1.12
VPS53-210ENST00000571456 SRGAP2BP0DMP2 458 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 MTIF2P46199 727 aaKnown RBP22.07■■□□□ 1.12
VPS53-210ENST00000571456 FMO5P49326 533 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 MRPL58Q14197 206 aaKnown RBP22.07■■□□□ 1.12
VPS53-210ENST00000571456 PSMD5Q16401 504 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 MAN2A1Q16706 1144 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 ZNF699Q32M78 642 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 ZNF667Q5HYK9 610 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 RTP2Q5QGT7 225 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 PLPP4Q5VZY2 271 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 CEP57Q86XR8 500 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 IRF2BP1Q8IU81 584 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 MTRRQ9UBK8 725 aa22.07■■□□□ 1.12
VPS53-210ENST00000571456 BECN2A8MW95 431 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 SPTLC1O15269 473 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 ASS1P00966 412 aaKnown RBP22.06■■□□□ 1.12
VPS53-210ENST00000571456 HLA-DRAP01903 254 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 TKTP29401 623 aaKnown RBP22.06■■□□□ 1.12
VPS53-210ENST00000571456 CLCN5P51795 746 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 TNNC1P63316 161 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 TPM4P67936 248 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 KCNH2Q12809 1159 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 VARS2Q5ST30 1063 aaKnown RBP22.06■■□□□ 1.12
VPS53-210ENST00000571456 CDKAL1Q5VV42 579 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 SMYD5Q6GMV2 418 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 TAS1R1Q7RTX1 841 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 THEM5Q8N1Q8 247 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 TTC39CQ8N584 583 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 LNX1Q8TBB1 728 aaPredicted RBP22.06■■□□□ 1.12
VPS53-210ENST00000571456 XYLT2Q9H1B5 865 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 MFSD1Q9H3U5 465 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 RAB20Q9NX57 234 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 MAFFQ9ULX9 164 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 SNX9Q9Y5X1 595 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 OTOGLQ3ZCN5 2332 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 TSC2P49815 1807 aa22.06■■□□□ 1.12
VPS53-210ENST00000571456 GTPBP10A4D1E9 387 aaKnown RBP22.05■■□□□ 1.12
VPS53-210ENST00000571456 OR6C75A6NL08 312 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 KCNJ18B7U540 433 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 VNN1O95497 513 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 LHX1P48742 406 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 MYL6P60660 151 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 MYL7Q01449 175 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 KCNJ12Q14500 433 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 WDR72Q3MJ13 1102 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 TCP11X2Q5H9J9 407 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 WDR44Q5JSH3 913 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 OVOS1Q6IE37 1185 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 ANKRD54Q6NXT1 300 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 TMEM184AQ6ZMB5 413 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 LIMS2Q7Z4I7 341 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 DNAI2Q9GZS0 605 aa22.05■■□□□ 1.12
VPS53-210ENST00000571456 I3L4J1 428 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 TACC1O75410 805 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 CA8P35219 290 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 SMARCB1Q12824 385 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 SLC8B1Q6J4K2 584 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 SYCE2Q6PIF2 218 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 LRSAM1Q6UWE0 723 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 RTL10Q7L3V2 364 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 CREBRFQ8IUR6 639 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 TAS1R2Q8TE23 839 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 HDAC7Q8WUI4 952 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 KLHL5Q96PQ7 755 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 TUBGCP2Q9BSJ2 902 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 MMRN2Q9H8L6 949 aa22.04■■□□□ 1.12
VPS53-210ENST00000571456 SAMSN1Q9NSI8 373 aaKnown RBP22.04■■□□□ 1.12
VPS53-210ENST00000571456 HIDE1A8MVS5 230 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 C2CD2LO14523 706 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 TBC1D4O60343 1298 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 CNPP09543 421 aaKnown RBP22.03■■□□□ 1.12
VPS53-210ENST00000571456 TRIM21P19474 475 aaKnown RBP22.03■■□□□ 1.12
VPS53-210ENST00000571456 IGFBP6P24592 240 aaPredicted RBP22.03■■□□□ 1.12
VPS53-210ENST00000571456 KCNC3Q14003 757 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 PUM1Q14671 1186 aaKnown RBP eCLIP22.03■■□□□ 1.12
VPS53-210ENST00000571456 NCAPHQ15003 741 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 CTXN3Q4LDR2 81 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 CBWD6Q4V339 395 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 CBWD3Q5JTY5 395 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 CBWD5Q5RIA9 395 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 FAM200AQ8TCP9 573 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 FAM81BQ96LP2 452 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 APOL5Q9BWW9 433 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 CYP3A43Q9HB55 503 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 FANCLQ9NW38 375 aa22.03■■□□□ 1.12
VPS53-210ENST00000571456 MTCL1Q9Y4B5 1905 aaKnown RBP22.03■■□□□ 1.12
VPS53-210ENST00000571456 TEX28O15482 410 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 CLSTN1O94985 981 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 ZNF18P17022 549 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms