RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 C4orf22Q6V702 233 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 NT5DC3Q86UY8 548 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 DDIASQ8IXT1 998 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 NDUFAF2Q8N183 169 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 FBXO36Q8NEA4 188 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 SLC35C1Q96A29 364 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 TRIM62Q9BVG3 475 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 SLC12A3P55017 1021 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 EFCAB12Q6NXP0 572 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 FAM111AQ96PZ2 611 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 MYOZ2Q9NPC6 264 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 PRDM4Q9UKN5 801 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 FAM86B1E9PN63 330 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 PDE2AO00408 941 aaPredicted RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 FAM86B2P0C5J1 330 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 ARHGEF19Q8IW93 802 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 ING2Q9H160 280 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 ELP3Q9H9T3 547 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 AGO4Q9HCK5 861 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 ABCF3Q9NUQ8 709 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 E2F8A0AVK6 867 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 SMIM22K7EJ46 135 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 MROH9Q5TGP6 573 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 KDELC2Q7Z4H8 507 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 FRMD8Q9BZ67 464 aaPredicted RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 MAP3K20Q9NYL2 800 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 HAO1Q9UJM8 370 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 PSMD3O43242 534 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 GYS1P13807 737 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 CPA2P48052 419 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 MED21Q13503 144 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 CCNG2Q16589 344 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 WDR59Q6PJI9 974 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 PDCD6IPQ8WUM4 868 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 KCNK16Q96T55 309 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 PRMT7Q9NVM4 692 aaPredicted RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 HACD3Q9P035 362 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 ZBBXA8MT70 800 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 SYF2O95926 243 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 MYL2P10916 166 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 STIP1P31948 543 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 USP10Q14694 798 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 CNGA3Q16281 694 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 PCNX4Q63HM2 1172 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 FASTKD5Q7L8L6 764 aaKnown RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 NLRP9Q7RTR0 991 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 CHST13Q8NET6 341 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 OR6J1Q8NGC5 347 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 EXD1Q8NHP7 514 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 KRT35Q92764 455 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 HPDLQ96IR7 371 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 TASP1Q9H6P5 420 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 TMX2Q9Y320 296 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 MAGEB2O15479 319 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 E2F6O75461 281 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 ZBTB7AO95365 584 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 POLBP06746 335 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 SPRP35270 261 aaPredicted RBP16.04■□□□□ 0.16
CIITA-204ENST00000570546 SKOR1P84550 965 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 AFG1LQ8WV93 481 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 CMTM5Q96DZ9 223 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 CGRRF1Q99675 332 aa16.04■□□□□ 0.16
CIITA-204ENST00000570546 ITGB3P05106 788 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 RPL21P46778 160 aaKnown RBP16.03■□□□□ 0.16
CIITA-204ENST00000570546 C16orf89Q6UX73 402 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 SARS2Q9NP81 518 aaKnown RBP16.03■□□□□ 0.16
CIITA-204ENST00000570546 ATRNO75882 1429 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 MAPTP10636 758 aaKnown RBP16.03■□□□□ 0.16
CIITA-204ENST00000570546 TCF7P36402 384 aaPredicted RBP16.03■□□□□ 0.16
CIITA-204ENST00000570546 PDK1Q15118 436 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 SPOCD1Q6ZMY3 1216 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 CYP2W1Q8TAV3 490 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 MTMR12Q9C0I1 747 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 CCDC78A2IDD5 438 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 SLITRK3O94933 977 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 NAMPTP43490 491 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 ACADSBP45954 432 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 NBPF20Q3BBV1 942 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 TTMPQ5BVD1 217 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 C4orf19Q8IY42 314 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 USP33Q8TEY7 942 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 UBA6A0AVT1 1052 aaPredicted RBP16.03■□□□□ 0.16
CIITA-204ENST00000570546 GHRP10912 638 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 TNFRSF8P28908 595 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 RBBP7Q16576 425 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 HEY2Q9UBP5 337 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 PCDHGC5Q9Y5F6 944 aa16.03■□□□□ 0.16
CIITA-204ENST00000570546 E5RI56 91 aa16.02■□□□□ 0.16
CIITA-204ENST00000570546 BNIP3LO60238 219 aa16.02■□□□□ 0.16
CIITA-204ENST00000570546 ENO3P13929 434 aaPredicted RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 VHLP40337 213 aa16.02■□□□□ 0.16
CIITA-204ENST00000570546 ZNF526Q8TF50 670 aaPredicted RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 PRPF31Q8WWY3 499 aaKnown RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 TMA16Q96EY4 203 aaKnown RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 ELMO2Q96JJ3 720 aa16.02■□□□□ 0.16
CIITA-204ENST00000570546 C20orf96Q9NUD7 363 aaPredicted RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 OTUD4Q01804 1114 aaKnown RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 KCNT1Q5JUK3 1230 aa16.02■□□□□ 0.16
CIITA-204ENST00000570546 ARID3BQ8IVW6 561 aaPredicted RBP16.02■□□□□ 0.16
CIITA-204ENST00000570546 UBOX5O94941 541 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms