RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SPATA18Q8TC71 538 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 MYLIPQ8WY64 445 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 SHC3Q92529 594 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 NT5C1BQ96P26 610 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 CDX2Q99626 313 aaPredicted RBP9.94□□□□□ -0.82
VPS35-211ENST00000569950 ZCWPW1Q9H0M4 648 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 CYP3A43Q9HB55 503 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 FNIP2Q9P278 1114 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 APEX2Q9UBZ4 518 aa9.94□□□□□ -0.82
VPS35-211ENST00000569950 MYBPHLA2RUH7 354 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 GOLGA6L19H0YKK7 550 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 HUS1O60921 280 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 CLASP2O75122 1294 aaKnown RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 URODP06132 367 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 UCHL3P15374 230 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 CDK11BP21127 795 aaKnown RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 CLCN4P51793 760 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 CDR1P51861 262 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 NDST1P52848 882 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 RAD23BP54727 409 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 UBXN1Q04323 297 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 YWHAHQ04917 246 aaPredicted RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 HYAL1Q12794 435 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 RAB33AQ14088 237 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 SMC1AQ14683 1233 aaKnown RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 ANKS3Q6ZW76 656 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 TMC7Q7Z402 723 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 CEP57Q86XR8 500 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 CRYBG2Q8N1P7 616 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 DEFB123Q8N688 67 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 TTC9BQ8N6N2 239 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 SLC4A11Q8NBS3 891 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 BAP1Q92560 729 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 MMS19Q96T76 1030 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 LSM14BQ9BX40 385 aaKnown RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 NGRNQ9NPE2 291 aaKnown RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 ACP6Q9NPH0 428 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 CISHQ9NSE2 258 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 DDX43Q9NXZ2 648 aaKnown RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 LMCD1Q9NZU5 365 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 BARX2Q9UMQ3 279 aaPredicted RBP9.93□□□□□ -0.82
VPS35-211ENST00000569950 CDY1Q9Y6F8 540 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 DOCK8Q8NF50 2099 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 ANAPC1Q9H1A4 1944 aa9.93□□□□□ -0.82
VPS35-211ENST00000569950 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 FOXN3O00409 490 aaPredicted RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 PER2O15055 1255 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 LINC01565O15544 149 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 SEC24AO95486 1093 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 EPCAMP16422 314 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 CD58P19256 250 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 OR1D2P34982 312 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 CLCN1P35523 988 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 LTBRP36941 435 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 CACNA2D1P54289 1103 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 UBASH3AP57075 661 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 PSMC1P62191 440 aaKnown RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 TNNC1P63316 161 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 DUSP6Q16828 381 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 CTC1Q2NKJ3 1217 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 CTXN3Q4LDR2 81 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 TCEAL5Q5H9L2 206 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 INTS6LQ5JSJ4 861 aaKnown RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 PDE12Q6L8Q7 609 aaKnown RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 ZNF280DQ6N043 979 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 RNF19BQ6ZMZ0 732 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 VSTM4Q8IW00 320 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 FAM71AQ8IYT1 594 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 PPM1KQ8N3J5 372 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 TFAP2BQ92481 460 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 ACBD6Q9BR61 282 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 RHOBTB2Q9BYZ6 727 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 FAM124BQ9H5Z6 455 aaPredicted RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 UBE2TQ9NPD8 197 aaPredicted RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 ENTPD7Q9NQZ7 604 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 MRPL17Q9NRX2 175 aaKnown RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 FAM207AQ9NSI2 230 aaPredicted RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 CEP72Q9P209 647 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 STK39Q9UEW8 545 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 PUF60Q9UHX1 559 aaKnown RBP9.92□□□□□ -0.82
VPS35-211ENST00000569950 DNAJC12Q9UKB3 198 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 DSEQ9UL01 958 aa9.92□□□□□ -0.82
VPS35-211ENST00000569950 MTMR11A4FU01 709 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 OR6C75A6NL08 312 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 F8VZ95 297 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 NRG2O14511 850 aaPredicted RBP9.91□□□□□ -0.82
VPS35-211ENST00000569950 TGM5O43548 720 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 SERPINC1P01008 464 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 GYPCP04921 128 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 CFHP08603 1231 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 PDGFRBP09619 1106 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 TBXAS1P24557 533 aaPredicted RBP9.91□□□□□ -0.82
VPS35-211ENST00000569950 GNL1P36915 607 aaPredicted RBP9.91□□□□□ -0.82
VPS35-211ENST00000569950 LHX1P48742 406 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 NDUFV1P49821 464 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 ZNF75DP51815 510 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 DLX2Q07687 328 aaPredicted RBP9.91□□□□□ -0.82
VPS35-211ENST00000569950 TBX2Q13207 712 aaPredicted RBP9.91□□□□□ -0.82
VPS35-211ENST00000569950 GPR17Q13304 367 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 UVSSAQ2YD98 709 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms