RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CXorf38Q8TB03 319 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 INTS4Q96HW7 963 aaKnown RBP18.47■□□□□ 0.55
CLN3-216ENST00000565316 ZNF560Q96MR9 790 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 FAM213AQ9BRX8 229 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 TBC1D7Q9P0N9 293 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 MYBPHLA2RUH7 354 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 PRAMEF12O95522 483 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 CDC25CP30307 473 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 CCR3P51677 355 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 CASP5P51878 434 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 NRLP54845 237 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 CEBPZQ03701 1054 aaKnown RBP18.46■□□□□ 0.55
CLN3-216ENST00000565316 GAS6Q14393 721 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 PPP2R5DQ14738 602 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 RALGPS2Q86X27 583 aaPredicted RBP18.46■□□□□ 0.55
CLN3-216ENST00000565316 GPIHBP1Q8IV16 184 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 FAM200AQ8TCP9 573 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 USP28Q96RU2 1077 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 ZMYM5Q9UJ78 669 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 SMG5Q9UPR3 1016 aaKnown RBP18.46■□□□□ 0.55
CLN3-216ENST00000565316 MTMR6Q9Y217 621 aa18.46■□□□□ 0.55
CLN3-216ENST00000565316 A0A087X0B3 334 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 SLC38A8A6NNN8 435 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 DPYSL4O14531 572 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 GCNT3O95395 438 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 LDHAP00338 332 aaKnown RBP18.45■□□□□ 0.54
CLN3-216ENST00000565316 HMGA1P17096 107 aaKnown RBP18.45■□□□□ 0.54
CLN3-216ENST00000565316 SOX9P48436 509 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 KPNA1P52294 538 aaPredicted RBP18.45■□□□□ 0.54
CLN3-216ENST00000565316 TFAMQ00059 246 aaKnown RBP18.45■□□□□ 0.54
CLN3-216ENST00000565316 PLCB2Q00722 1185 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 WDR44Q5JSH3 913 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 TMEM150AQ86TG1 271 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 SPEM1Q8N4L4 309 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 GPR161Q8N6U8 529 aaKnown RBP18.45■□□□□ 0.54
CLN3-216ENST00000565316 C1orf127Q8N9H9 656 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 SAAL1Q96ER3 474 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 SLC46A2Q9BY10 475 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 FGFBP2Q9BYJ0 223 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 DLL3Q9NYJ7 618 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 NCDNQ9UBB6 729 aa18.45■□□□□ 0.54
CLN3-216ENST00000565316 NCOR2Q9Y618 2525 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 SPECC1L-ADORA2AF8WAN1 911 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 EXTL3O43909 919 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 PAPSS2O95340 614 aaPredicted RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 POLR2BP30876 1174 aaKnown RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 CTHP32929 405 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 STAT6P42226 847 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 NASPP49321 788 aaPredicted RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 CDR1P51861 262 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 CYP4F8P98187 520 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 LRRC32Q14392 662 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 TXNDC11Q6PKC3 985 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 PDCL2Q8N4E4 241 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 LRRC52Q8N7C0 313 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 BPIFB1Q8TDL5 484 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 GIPC2Q8TF65 315 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 CACTINQ8WUQ7 758 aaKnown RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 LEO1Q8WVC0 666 aaPredicted RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 ZFYVE19Q96K21 471 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 GCNAQ96QF7 691 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 CBWD1Q9BRT8 395 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 PANK2Q9BZ23 570 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 ZSCAN16Q9H4T2 348 aaPredicted RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 PANK4Q9NVE7 773 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 TMLHEQ9NVH6 421 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 GDAP2Q9NXN4 497 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 ABI2Q9NYB9 513 aaPredicted RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 RBAKQ9NYW8 714 aaPredicted RBP18.44■□□□□ 0.54
CLN3-216ENST00000565316 GTSE1Q9NYZ3 720 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 L1RE1Q9UN81 338 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 AGAP1Q9UPQ3 857 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 PCDHB5Q9Y5E4 795 aa18.44■□□□□ 0.54
CLN3-216ENST00000565316 NUP210Q8TEM1 1887 aaPredicted RBP18.43■□□□□ 0.54
CLN3-216ENST00000565316 SOBPA7XYQ1 873 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 F11P03951 625 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 ITGB3P05106 788 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 IDEP14735 1019 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 CXCL12P48061 93 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 TSPY1Q01534 308 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 SATB1Q01826 763 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 PUM1Q14671 1186 aaKnown RBP eCLIP18.43■□□□□ 0.54
CLN3-216ENST00000565316 TAF12Q16514 161 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 NFE2Q16621 373 aaPredicted RBP18.43■□□□□ 0.54
CLN3-216ENST00000565316 DGKKQ5KSL6 1271 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 SCARA3Q6AZY7 606 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 SYCP3Q8IZU3 236 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 CMTM8Q8IZV2 173 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 TMEM86AQ8N2M4 240 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 CELF5Q8N6W0 485 aaKnown RBP18.43■□□□□ 0.54
CLN3-216ENST00000565316 SPATA18Q8TC71 538 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 PKMYT1Q99640 499 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 ACBD6Q9BR61 282 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 ITGA11Q9UKX5 1188 aa18.43■□□□□ 0.54
CLN3-216ENST00000565316 TGM1P22735 817 aa18.42■□□□□ 0.54
CLN3-216ENST00000565316 DDX6P26196 483 aaKnown RBP eCLIP18.42■□□□□ 0.54
CLN3-216ENST00000565316 NLRP12P59046 1061 aa18.42■□□□□ 0.54
CLN3-216ENST00000565316 SECISBP2LQ93073 1101 aaKnown RBP18.42■□□□□ 0.54
CLN3-216ENST00000565316 TMEM206Q9H813 350 aa18.42■□□□□ 0.54
CLN3-216ENST00000565316 ABCB6Q9NP58 842 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms