RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MICAL2O94851 1124 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 STAU1O95793 577 aaKnown RBP14.37□□□□□ -0.11
CLK3-216ENST00000564468 KRT13P13646 458 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 PSMC2P35998 433 aaKnown RBP14.37□□□□□ -0.11
CLK3-216ENST00000564468 UBE2HP62256 183 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 TNNC1P63316 161 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 CLDN10P78369 228 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 NTHL1P78549 312 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 ADAM9Q13443 819 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 BIRC3Q13489 604 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 TDGQ13569 410 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 INTS8Q75QN2 995 aaKnown RBP14.37□□□□□ -0.11
CLK3-216ENST00000564468 PDZD4Q76G19 769 aaPredicted RBP14.37□□□□□ -0.11
CLK3-216ENST00000564468 ITIH5Q86UX2 942 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 OR10T2Q8NGX3 314 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 MMS19Q96T76 1030 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 PHOX2BQ99453 314 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 TSG101Q99816 390 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 CORO1BQ9BR76 489 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 KCNK12Q9HB15 430 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 HCFC1R1Q9NWW0 138 aa14.37□□□□□ -0.11
CLK3-216ENST00000564468 DDX43Q9NXZ2 648 aaKnown RBP14.37□□□□□ -0.11
CLK3-216ENST00000564468 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
CLK3-216ENST00000564468 CETN3O15182 167 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 GFRA3O60609 400 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 N4BP1O75113 896 aaKnown RBP14.36□□□□□ -0.11
CLK3-216ENST00000564468 FGF19O95750 216 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 CST3P01034 146 aaPredicted RBP14.36□□□□□ -0.11
CLK3-216ENST00000564468 ASGR2P07307 311 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 CASP4P49662 377 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 VAMP7P51809 220 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 NUBP1P53384 320 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 VEPH1Q14D04 833 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 SOWAHAQ2M3V2 549 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 MTSS1LQ765P7 747 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 ATAD1Q8NBU5 361 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 ZNF516Q92618 1163 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 ATOH1Q92858 354 aaPredicted RBP14.36□□□□□ -0.11
CLK3-216ENST00000564468 FGF13Q92913 245 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 TMEM209Q96SK2 561 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 RTP3Q9BQQ7 232 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 MKNK1Q9BUB5 465 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 ASAH2Q9NR71 780 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 GDE1Q9NZC3 331 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 PCDHB5Q9Y5E4 795 aa14.36□□□□□ -0.11
CLK3-216ENST00000564468 PTPRDP23468 1912 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 GABRDO14764 452 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 PSMA7O14818 248 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 GADD45BO75293 160 aaPredicted RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 TACC1O75410 805 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 CLSTN1O94985 981 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 C4BPAP04003 597 aaKnown RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 P4HA1P13674 534 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 PRCPP42785 496 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 TCF15Q12870 199 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 MAPRE1Q15691 268 aaKnown RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 WDR72Q3MJ13 1102 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 MGAT5BQ3V5L5 792 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 ZCWPW2Q504Y3 356 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 INTS6LQ5JSJ4 861 aaKnown RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 LIMS2Q7Z4I7 341 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 FAM186BQ8IYM0 893 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 SMYD4Q8IYR2 804 aaPredicted RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 ITFG1Q8TB96 612 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 FAM84AQ96KN4 292 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 SEPT5Q99719 369 aaPredicted RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 GPR88Q9GZN0 384 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 GZF1Q9H116 711 aaPredicted RBP14.35□□□□□ -0.11
CLK3-216ENST00000564468 SNX25Q9H3E2 840 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 VRTNQ9H8Y1 702 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 ABCB6Q9NP58 842 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 CEP72Q9P209 647 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 CDH9Q9ULB4 789 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 SLC27A5Q9Y2P5 690 aa14.35□□□□□ -0.11
CLK3-216ENST00000564468 ANHXE9PGG2 379 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 STX10O60499 249 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 VNN2O95498 520 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 EPB41P11171 864 aaKnown RBP14.34□□□□□ -0.11
CLK3-216ENST00000564468 WARSP23381 471 aaKnown RBP14.34□□□□□ -0.11
CLK3-216ENST00000564468 EPHA5P54756 1037 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 MYL6P60660 151 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 FKBP3Q00688 224 aaKnown RBP14.34□□□□□ -0.11
CLK3-216ENST00000564468 LRRC63Q05C16 580 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 NCOA4Q13772 614 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 TAF12Q16514 161 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 SGSM1Q2NKQ1 1148 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 ZNF699Q32M78 642 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 ZACNQ401N2 412 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 ZNF667Q5HYK9 610 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 TDRD10Q5VZ19 366 aaKnown RBP14.34□□□□□ -0.11
CLK3-216ENST00000564468 C4orf50Q6ZRC1 276 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 LRRTM3Q86VH5 581 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 NPAS3Q8IXF0 933 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 FAM200AQ8TCP9 573 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 PLEKHO2Q8TD55 490 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 TAF4BQ92750 862 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 PSMG2Q969U7 264 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 DHTKD1Q96HY7 919 aaPredicted RBP14.34□□□□□ -0.11
CLK3-216ENST00000564468 FUBP3Q96I24 572 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK3-216ENST00000564468 CRISPLD1Q9H336 500 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms