RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CASP4P49662 377 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 VAMP7P51809 220 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 VEPH1Q14D04 833 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 SOWAHAQ2M3V2 549 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 MTSS1LQ765P7 747 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 ATAD1Q8NBU5 361 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 ZNF516Q92618 1163 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 FGF13Q92913 245 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 TMEM209Q96SK2 561 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 RTP3Q9BQQ7 232 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 MKNK1Q9BUB5 465 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 ASAH2Q9NR71 780 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 GDE1Q9NZC3 331 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 PCDHB5Q9Y5E4 795 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 PTPRDP23468 1912 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 TMEM221A6NGB7 291 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 M0R296 226 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 GABRDO14764 452 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 PSMA7O14818 248 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 GADD45BO75293 160 aaPredicted RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 TACC1O75410 805 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 CLSTN1O94985 981 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 C4BPAP04003 597 aaKnown RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 P4HA1P13674 534 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 PRCPP42785 496 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 MAPRE1Q15691 268 aaKnown RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 WDR72Q3MJ13 1102 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 MGAT5BQ3V5L5 792 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 ZCWPW2Q504Y3 356 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 INTS6LQ5JSJ4 861 aaKnown RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 LIMS2Q7Z4I7 341 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 BMP8AQ7Z5Y6 402 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 FAM186BQ8IYM0 893 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 SMYD4Q8IYR2 804 aaPredicted RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 ITFG1Q8TB96 612 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 FAM84AQ96KN4 292 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 SEPT5Q99719 369 aaPredicted RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 GPR88Q9GZN0 384 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 GZF1Q9H116 711 aaPredicted RBP14.35□□□□□ -0.11
CLK3-213ENST00000563842 SNX25Q9H3E2 840 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 VRTNQ9H8Y1 702 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 ABCB6Q9NP58 842 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 C11orf16Q9NQ32 467 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 CEP72Q9P209 647 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 CDH9Q9ULB4 789 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 SLC27A5Q9Y2P5 690 aa14.35□□□□□ -0.11
CLK3-213ENST00000563842 FAM86C2PA6NEL3 165 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 ANHXE9PGG2 379 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 STX10O60499 249 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 VNN2O95498 520 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 EPB41P11171 864 aaKnown RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 WARSP23381 471 aaKnown RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 EPHA5P54756 1037 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 MYL6P60660 151 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 FKBP3Q00688 224 aaKnown RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 LRRC63Q05C16 580 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 NCOA4Q13772 614 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 TAF12Q16514 161 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 SGSM1Q2NKQ1 1148 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 ZNF699Q32M78 642 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 ZACNQ401N2 412 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 ZNF667Q5HYK9 610 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 TDRD10Q5VZ19 366 aaKnown RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 C4orf50Q6ZRC1 276 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 ALYREFQ86V81 257 aaKnown RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 LRRTM3Q86VH5 581 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 NPAS3Q8IXF0 933 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 FAM200AQ8TCP9 573 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 PLEKHO2Q8TD55 490 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 TAF4BQ92750 862 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 PSMG2Q969U7 264 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 DHTKD1Q96HY7 919 aaPredicted RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 FUBP3Q96I24 572 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK3-213ENST00000563842 CRISPLD1Q9H336 500 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 ABI2Q9NYB9 513 aaPredicted RBP14.34□□□□□ -0.11
CLK3-213ENST00000563842 DUSP12Q9UNI6 340 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 TRIOO75962 3097 aa14.34□□□□□ -0.11
CLK3-213ENST00000563842 GREB1Q4ZG55 1949 aa14.33□□□□□ -0.11
CLK3-213ENST00000563842 AKAP3O75969 853 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 HAPLN1P10915 354 aaPredicted RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 MYL4P12829 197 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 GNL1P36915 607 aaPredicted RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 RPL10AP62906 217 aaKnown RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 DLG4P78352 724 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 PRSS36Q5K4E3 855 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 SCARA3Q6AZY7 606 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 SV2AQ7L0J3 742 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 DNAJB7Q7Z6W7 309 aaPredicted RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 OSTM1Q86WC4 334 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 SPATA2LQ8IUW3 424 aaPredicted RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 ADSSL1Q8N142 457 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 SLC44A3Q8N4M1 653 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 CCDC150Q8NCX0 1101 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 OR6B3Q8NGW1 331 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 ING5Q8WYH8 240 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 ERCC4Q92889 916 aaPredicted RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 PBXIP1Q96AQ6 731 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 MCRS1Q96EZ8 462 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 SYT15Q9BQS2 421 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 IMPG2Q9BZV3 1241 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms