RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 AFF4Q9UHB7 1163 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 LRCH1Q9Y2L9 728 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 MED16Q9Y2X0 877 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 A0A087WWL8 130 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 A0A087WZ62 844 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 FAM234BA2RU67 622 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 LGALS16A8MUM7 142 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MASP2O00187 686 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TRIM38O00635 465 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ADAMTS3O15072 1205 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 HOXA3O43365 443 aaPredicted RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 VPS4BO75351 444 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SLC43A1O75387 559 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 FGF18O76093 207 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 HAUS5O94927 633 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 AGFG2O95081 481 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 KIF20AO95235 890 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TNFRSF6BO95407 300 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 NDST3O95803 873 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MT-ND5P03915 603 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GRPP07492 148 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GNAI3P08754 354 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 RARBP10826 455 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MTHFD1P11586 935 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 FCER1AP12319 257 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 VEGFAP15692 232 aaPredicted RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 CHRM3P20309 590 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MAKP20794 623 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 EEF1GP26641 437 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 TECP42680 631 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ALDH9A1P49189 494 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SLC11A2P49281 568 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 CARSP49589 748 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 RENBPP51606 427 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 NPEPPSP55786 919 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GNAI1P63096 354 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 BTKQ06187 659 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SLFN5Q08AF3 891 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 FSTL1Q12841 308 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 RAPGEF1Q13905 1077 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 KIF22Q14807 665 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PUM3Q15397 648 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 ARL13BQ3SXY8 428 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GAGE13Q4V321 117 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 CCDC38Q502W7 563 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 NOMO2Q5JPE7 1267 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 UTP14CQ5TAP6 766 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 EMC10Q5UCC4 262 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ZDHHC24Q6UX98 284 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 UNC13DQ70J99 1090 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PDZD4Q76G19 769 aaPredicted RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 PRIMA1Q86XR5 153 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SYT12Q8IV01 421 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SYTL1Q8IYJ3 562 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TXLNBQ8N3L3 684 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 DNAJC5GQ8N7S2 189 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MB21D1Q8N884 522 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ATG16L2Q8NAA4 619 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ATP11CQ8NB49 1132 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PDPRQ8NCN5 879 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SLC17A8Q8NDX2 589 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 NSUN7Q8NE18 718 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 FAM46DQ8NEK8 389 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 IL17RDQ8NFM7 739 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TBC1D15Q8TC07 691 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ATXN2LQ8WWM7 1075 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 PPM1EQ8WY54 764 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 RAPGEF4Q8WZA2 1011 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 RABGGTAQ92696 567 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 LPPQ93052 612 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ZNF566Q969W8 418 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ARL8AQ96BM9 186 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 IQCDQ96DY2 449 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 LRRC46Q96FV0 321 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TMEM41AQ96HV5 264 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PHACTR3Q96KR7 559 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SNX22Q96L94 193 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 KLHL32Q96NJ5 620 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SCLT1Q96NL6 688 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 BBC3Q96PG8 261 aaPredicted RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 NELL2Q99435 816 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 NEU1Q99519 415 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TCF25Q9BQ70 676 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 HERPUD2Q9BSE4 406 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 BRIP1Q9BX63 1249 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PLA2G12BQ9BX93 195 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 STK33Q9BYT3 514 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 IMPG2Q9BZV3 1241 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TINAGL1Q9GZM7 467 aaPredicted RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 CHST8Q9H2A9 424 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GSTO2Q9H4Y5 243 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 BRD9Q9H8M2 597 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PRDM16Q9HAZ2 1276 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 OBP2BQ9NPH6 170 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TBC1D23Q9NUY8 699 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GNL3LQ9NVN8 582 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 SIDT1Q9NXL6 827 aaKnown RBP1.98□□□□□ -2.09
USP3-209ENST00000558925 MOCS1Q9NZB8 636 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 IGSF9Q9P2J2 1179 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MYO1AQ9UBC5 1043 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms